Evidence map›Paper›PMID 18024792›Full record

ArticleBlood2008

Chromatin modifications induced by PML-RARalpha repress critical targets in leukemogenesis as analyzed by ChIP-Chip.

Claudia Hoemme, Abdul Peerzada, Gerhard Behre, Yipeng Wang, Michael McClelland, Kay Nieselt, Matthias Zschunke, Christine Disselhoff, Shuchi Agrawal, Fabienne Isken and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 71 citations in OpenAlex.

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  19. Epigenetic distortion to VDR transcriptional regulation in prostate cancer cells.The Journal of steroid biochemistry and molecular biology · 2013
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Claudia HoemmeDepartment of Medicine, Hematology and Oncology and Interdisciplinary Center for Clinical Research (IZKF), University of Münster, Domagkstrasse 3, Münster, Germany.
Abdul Peerzada
Gerhard Behre
Yipeng Wang
Michael McClelland
Kay Nieselt
Matthias Zschunke
Christine Disselhoff
Shuchi Agrawal
Fabienne Isken
Nicola Tidow
Wolfgang E Berdel
Hubert Serve
Carsten Müller-Tidow
University of Münster · DESidney Kimmel Cancer Center · USUniversity of Tübingen · DE

Funding

Evaluation of Predictive Signatures of Prostate CancerU01CA114810 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI MERCOLA, DAN · 2005 to 2009
$8.2M
RNA FINGERPRINTING USING ARBITRARILY PRIMED PCRR01CA068822 · NCI · VACCINE RESEARCH INSTITUTE OF SAN DIEGO · PI MCCLELLAND, MICHAEL · 1995 to 2008
$2.8M
NCI NIH HHS R01 CA068822NCI NIH HHS R01 CA 68822NCI NIH HHS U01 CA 0114810NCI NIH HHS U01 CA114810
6 · The paper itself

Abstract

The translocation t(15;17) generates the chimeric PML-RARalpha transcription factor that is the initiating event of acute promyelocytic leukemia. A global view of PML-RARalpha transcriptional functions was obtained by genome-wide binding and chromatin modification analyses combined with genome-wide expression data. Chromatin immunoprecipitation (ChIP)-chip experiments identified 372 direct genomic PML-RARalpha targets. A subset of these was confirmed in primary acute promyelocytic leukemia. Direct PML-RARalpha targets include regulators of global transcriptional programs as well as critical regulatory genes for basic cellular functions such as cell-cycle control and apoptosis. PML-RARalpha binding universally led to HDAC1 recruitment, loss of histone H3 acetylation, increased tri-methylation of histone H3 lysine 9, and unexpectedly increased trimethylation of histone H3 lysine 4. The binding of PML-RARalpha to target promoters and the resulting histone modifications resulted in mRNA repression of functionally relevant genes. Taken together, our results reveal that the transcription factor PML-RARalpha regulates key cancer-related genes and pathways by inducing a repressed chromatin formation on its direct genomic target genes.

Indexed as

Chromatin ImmunoprecipitationChromatinGene Expression ProfilingGene Expression Regulation, LeukemicGenome, HumanHistonesHumansLeukemiaNeoplasm ProteinsOncogene Proteins, FusionPromoter Regions, GeneticProtein BindingReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerU937 CellsChromatinHistonesNeoplasm ProteinsOncogene Proteins, Fusionpromyelocytic leukemia-retinoic acid receptor alpha fusion oncoproteinRNA, Messenger

Identifiers

PMID18024792
PMCPMC2254548
OpenAlexW2075179204

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.