Evidence map›Paper›PMID 18024685›Full record

ArticleApplied and environmental microbiology2008

Comparative analysis of the sigma B-dependent stress responses in Listeria monocytogenes and Listeria innocua strains exposed to selected stress conditions.

Sarita Raengpradub, Martin Wiedmann, Kathryn J Boor

Abstract readComparative Study
In one paragraph

Article in Applied and environmental microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Article
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  11. Microorganisms · 2021
    Review
  12. Article
  13. Article
  14. Review
  15. Frontiers in microbiology · 2021
    Article
  16. Review
  17. Article
  18. Article
  19. The σFrontiers in microbiology · 2020
    Review
  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Sarita RaengpradubDepartment of Food Science, 413 Stocking Hall, Cornell University, Ithaca, NY 14853, USA.
Martin Wiedmann
Kathryn J Boor

Funding

Sigma B and stress response in Listeria monocytogenesR01AI052151 · NIAID · CORNELL UNIVERSITY ITHACA · PI BOOR, KATHRYN J · 2003 to 2012
$2.7M
NIAID NIH HHS R01 AI052151NIAID NIH HHS R01-AI052151-01A1
6 · The paper itself

Abstract

The alternative sigma factor sigma(B) contributes to transcription of stress response and virulence genes in diverse gram-positive bacterial species. The composition and functions of the Listeria monocytogenes and Listeria innocua sigma(B) regulons were hypothesized to differ due to virulence differences between these closely related species. Transcript levels in stationary-phase cells and in cells exposed to salt stress were characterized by microarray analyses for both species. In L. monocytogenes, 168 genes were positively regulated by sigma(B); 145 of these genes were preceded by a putative sigma(B) consensus promoter. In L. innocua, 64 genes were positively regulated by sigma(B). sigma(B) contributed to acid stress survival in log-phase cells for both species but to survival in stationary-phase cells only for L. monocytogenes. In summary, (i) the L. monocytogenes sigma(B) regulon includes >140 genes that are both directly and positively regulated by sigma(B), including genes encoding proteins with importance in stress response, virulence, transcriptional regulation, carbohydrate metabolism, and transport; (ii) a number of L. monocytogenes genes encoding flagellar proteins show higher transcript levels in the Delta sigB mutant, and both L. monocytogenes and L. innocua Delta sigB null mutants have increased motility compared to the respective isogenic parent strains, suggesting that sigma(B) affects motility and chemotaxis; and (iii) although L. monocytogenes and L. innocua differ in sigma(B)-dependent acid stress resistance and have species-specific sigma(B)-dependent genes, the L. monocytogenes and L. innocua sigma(B) regulons show considerable conservation, with a common set of at least 49 genes that are sigma(B) dependent in both species.

Indexed as

AcidsAnti-Bacterial AgentsBacterial ProteinsGene DeletionGene Expression ProfilingGene Expression Regulation, BacterialGenes, BacterialListeriaMicrobial ViabilityOligonucleotide Array Sequence AnalysisRegulonSaltsSigma FactorAcidsAnti-Bacterial AgentsBacterial ProteinsSaltsSigB protein, BacteriaSigma Factor

Identifiers

PMID18024685
PMCPMC2223194

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.