Evidence map›Paper›PMID 18024569›Full record

ArticleThe Plant cell2007

Downregulation of cinnamoyl-coenzyme A reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure.

Jean-Charles Leplé, Rebecca Dauwe, Kris Morreel, Véronique Storme, Catherine Lapierre, Brigitte Pollet, Annette Naumann, Kyu-Young Kang, Hoon Kim, Katia Ruel and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 406 citations in OpenAlex.

  1. Review
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  6. Review
  7. Function Analysis of a Maize Endo-1,4-β-xylanase GeneInternational journal of molecular sciences · 2024
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  12. Pinoresinol rescues developmental phenotypes of Arabidopsis phenylpropanoid mutants overexpressingProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  14. Article
  15. Review
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64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 12 institutions in 6 countries.

Jean-Charles LepléDepartment of Plant Systems Biology, Flanders Institute for Biotechnology, 9052 Gent, Belgium.
Rebecca Dauwe
Kris Morreel
Véronique Storme
Catherine Lapierre
Brigitte Pollet
Annette Naumann
Kyu-Young Kang
Hoon Kim
Katia Ruel
Andrée Lefèbvre
Jean-Paul Joseleau
Jacqueline Grima-Pettenati
Riet De Rycke
Sara Andersson-Gunnerås
Alexander Erban
Ines Fehrle
Michel Petit-Conil
Joachim Kopka
Andrea Polle
Eric Messens
Björn Sundberg
Shawn D Mansfield
John Ralph
Gilles Pilate
Wout Boerjan
Ghent University · BECentre National de la Recherche Scientifique · FRMax Planck Institute of Molecular Plant Physiology · DEAgroParisTech · FRSwedish University of Agricultural Sciences · SEUniversity of British Columbia · CAUniversity of Göttingen · DEVlaams Instituut voor Biotechnologie · BECentre Technique du Papier · FRLaboratoire de Recherche en Sciences Végétales · FRUnited States Department of Agriculture · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cinnamoyl-CoA reductase (CCR) catalyzes the penultimate step in monolignol biosynthesis. We show that downregulation of CCR in transgenic poplar (Populus tremula x Populus alba) was associated with up to 50% reduced lignin content and an orange-brown, often patchy, coloration of the outer xylem. Thioacidolysis, nuclear magnetic resonance (NMR), immunocytochemistry of lignin epitopes, and oligolignol profiling indicated that lignin was relatively more reduced in syringyl than in guaiacyl units. The cohesion of the walls was affected, particularly at sites that are generally richer in syringyl units in wild-type poplar. Ferulic acid was incorporated into the lignin via ether bonds, as evidenced independently by thioacidolysis and by NMR. A synthetic lignin incorporating ferulic acid had a red-brown coloration, suggesting that the xylem coloration was due to the presence of ferulic acid during lignification. Elevated ferulic acid levels were also observed in the form of esters. Transcript and metabolite profiling were used as comprehensive phenotyping tools to investigate how CCR downregulation impacted metabolism and the biosynthesis of other cell wall polymers. Both methods suggested reduced biosynthesis and increased breakdown or remodeling of noncellulosic cell wall polymers, which was further supported by Fourier transform infrared spectroscopy and wet chemistry analysis. The reduced levels of lignin and hemicellulose were associated with an increased proportion of cellulose. Furthermore, the transcript and metabolite profiling data pointed toward a stress response induced by the altered cell wall structure. Finally, chemical pulping of wood derived from 5-year-old, field-grown transgenic lines revealed improved pulping characteristics, but growth was affected in all transgenic lines tested.

Indexed as

Aldehyde OxidoreductasesCarbohydratesCell WallChromatography, High Pressure LiquidDown-RegulationFluorescenceGene Expression ProfilingGene Expression Regulation, PlantImmunohistochemistryLigninPhenolsPhenotypePlants, Genetically ModifiedPopulusSolubilitySpectroscopy, Fourier Transform InfraredAldehyde OxidoreductasesCarbohydratescinnamoyl CoA reductaseLigninPhenols

Identifiers

PMID18024569
PMCPMC2174873
OpenAlexW2104089404

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.