Evidence map›Paper›PMID 18024122›Full record

ArticleMicrobes and infection

Role of futC slipped strand mispairing in Helicobacter pylori Lewisy phase variation.

Edgardo Sanabria-Valentín, Marie-Teresa C Colbert, Martin J Blaser

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In one paragraph

Article in Microbes and infection. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Edgardo Sanabria-ValentínDepartment of Microbiology, New York University School of Medicine, 550 First Avenue, New York, NY 10016, USA.
Marie-Teresa C Colbert
Martin J Blaser
New York University · US

Funding

Title omittedF31GM070098 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SANABRIA-VALENTIN, EDGARDO LUIS · 2003 to 2007
$214k
NIGMS NIH HHS F31 GM070098NIGMS NIH HHS F31GM070098NIGMS NIH HHS R01GM6370
6 · The paper itself

Abstract

The O antigen of the Helicobacter pylori lipopolysaccharide is composed of repeating units of fucosylated Lewis (Le) antigens. The alpha(1,2)-fucosyltransferase (futC) of H. pylori, which catalyzes the conversion of Le(x) to Le(y) by addition of fucose, is subject to slipped-strand mispairing involving a homonucleotide (poly-C) tract. To explore the distribution of Le phenotypes within H. pylori cells grown in vitro, 379 single colonies of strain J166 were examined for Le expression. Two major populations with reciprocal Le(x)/Le(y) phenotypes were identified. Phenotypes correlated with futC frame status, suggesting that strain J166 represents a mixed population with respect to futC poly-C tract length, which was confirmed by a translational reporter. After hundreds of generations in vitro, phenotypes did not change significantly, indicating that the observed J166 Le diversity reflects the founding population. Since slipped-strand mispairing in the futC poly-C tract was postulated to explain the Le(y) phenotypic change observed in J166 derivative strain 98-169 isolated 10 months after rhesus monkey challenge, in trans complementation with in-frame futC was performed. Le(y) synthesis was restored and Le(x) expression was reciprocally lowered. From these studies, we confirmed the principal role of futC slipped-strand mispairing in Le antigenic variation in vitro and in vivo.

Indexed as

Antigenic VariationAnimalsBase SequenceFrameshift MutationFucosyltransferasesHelicobacter InfectionsHelicobacter pyloriHumansLewis Blood Group AntigensMacaca mulattaMolecular Sequence DataPoly CSequence Analysis, DNAFucosyltransferasesLewis Blood Group AntigensPoly C

Identifiers

PMID18024122
PMCPMC2245886
OpenAlexW2021094502

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.