Evidence map›Paper›PMID 18023479›Full record

ArticleMolecular immunology2008

AID-mediated diversification within the IgL locus of chicken DT40 cells is restricted to the transcribed IgL gene.

Anjali R Gopal, Sebastian D Fugmann

Open access · greenAbstract read
In one paragraph

Article in Molecular immunology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Separation of mutational and transcriptional enhancers in Ig genes.Journal of immunology (Baltimore, Md. : 1950) · 2011
    Article
  3. Article
  4. Activation-induced cytidine deaminase-mediated hypermutation in the DT40 cell line.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Anjali R GopalMolecular Immunology Unit, Laboratory of Cellular and Molecular Biology, National Institute on Aging, National Institutes of Health, 5600 Nathan Shock Drive, Baltimore, MD 21224, USA.
Sebastian D Fugmann
National Institute on Aging · USNational Institutes of Health · US

Funding

DNA recombination in LymphocytesZ01AG000387 · NIA · NATIONAL INSTITUTE ON AGING · PI FUGMANN, SEBASTIAN D. · 2005 to 2008
$1.2M
Intramural NIH HHS Z01 AG000387
6 · The paper itself

Abstract

Somatic hypermutation (SHM) and gene conversion (GCV) are closely related processes that increase the diversity the primary immunoglobulin repertoire. In both processes the activation-induced cytidine deaminase (AID) converts cytosine residues to uracils within the DNA of the immunoglobulin (Ig) genes in a transcription-dependent manner, and subsequent error-prone repair processes lead to changes in the antigen recognition site of the encoded receptors. This activity is specifically recruited to the Ig loci by unknown mechanisms. Our analyses of the chicken B-cell line DT40, and derivatives thereof, now revealed that even the closest neighbors of the Ig light chain (IgL) gene are protected from AID activity, albeit being transcribed and thus acting as potential targets of AID. Our findings are in support of a model in which cis-acting DNA boundary elements restrict AID activity to the IgL locus and guard the genome in the vicinity of the IgL gene from deleterious mutations.

Indexed as

Genetic VariationTranscription, GeneticAICDA (Activation-Induced Cytidine Deaminase)AllelesAnimalsCarrier ProteinsCell LineChickensCytidine DeaminaseDNA Mutational AnalysisImmunoglobulin Light ChainsPolymorphism, GeneticPre-B Cell ReceptorsPromoter Regions, GeneticAICDA (Activation-Induced Cytidine Deaminase)Carrier ProteinsCytidine DeaminaseImmunoglobulin Light ChainsPre-B Cell Receptors

Identifiers

PMID18023479
PMCPMC2267867
OpenAlexW1994131854

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.