Evidence map›Paper›PMID 18023161›Full record

ArticleMatrix biology : journal of the International Society for Matrix Biology2008

Expression of two novel alternatively spliced COL2A1 isoforms during chondrocyte differentiation.

Audrey McAlinden, Brian Johnstone, John Kollar, Najam Kazmi, Thomas M Hering

Open access · greenAbstract read
In one paragraph

Article in Matrix biology : journal of the International Society for Matrix Biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

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  8. Review
  9. Article
  10. Characterization of a murine type IIB procollagen-specific antibody.Matrix biology : journal of the International Society for Matrix Biology · 2014
    Article
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  16. Quantification of type II procollagen splice forms using alternative transcript-qPCR (AT-qPCR).Matrix biology : journal of the International Society for Matrix Biology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Audrey McAlindenDepartment of Orthopaedic Surgery, Washington University School of Medicine 4940 Parkview Place, St Louis, MO 63110, United States.
Brian Johnstone
John Kollar
Najam Kazmi
Thomas M Hering
Case Western Reserve University · USWashington University in St. Louis · US

Funding

REGULATION OF GENE EXPRESSION IN CARTILAGER01AR036994 · NIAMS · WASHINGTON UNIVERSITY · PI SANDELL, LINDA J · 1987 to 2009
$3.1M
REGULATION OF AGGRECAN CATABOLISMR01AR047892 · NIAMS · CASE WESTERN RESERVE UNIVERSITY · PI HERING, THOMAS M · 2001 to 2005
$1.4M
IN VITRO CHONDROGENESIS OF BONE MARROW MESENCHYMAL CELLSR01AR044390 · NIAMS · OREGON HEALTH AND SCIENCE UNIVERSITY · PI JOHNSTONE, BRIAN · 1997 to 2004
$1.2M
TRANSCRIPTIONAL CONTROL OF CHONDROGENIC DIFFERENTIATIONR01AR046196 · NIAMS · CASE WESTERN RESERVE UNIVERSITY · PI HERING, THOMAS M · 1999 to 2002
$672k
Zfp28 and Mesenchymal Stem Cell DifferentiationR21HD049834 · NICHD · CASE WESTERN RESERVE UNIVERSITY · PI HERING, THOMAS MARTIN · 2006 to 2007
$348k
NIAMS NIH HHS AR036994NIAMS NIH HHS AR44390NIAMS NIH HHS AR 46196NIAMS NIH HHS R01 AR036994NIAMS NIH HHS R01 AR044390NIAMS NIH HHS R01 AR046196NIAMS NIH HHS R01 AR047892NICHD NIH HHS HD049834NICHD NIH HHS R21 HD049834
6 · The paper itself

Abstract

Alternative splicing of the type II procollagen gene (COL2A1) is developmentally regulated during chondrogenesis. Type IIA procollagen (+ exon 2) is synthesized by chondroprogenitor cells while type IIB procollagen (- exon 2) is synthesized by differentiated chondrocytes. Here, we report expression of two additional alternatively spliced COL2A1 isoforms during chondrocyte differentiation of bone marrow-derived mesenchymal stem cells (MSCs). One isoform, named IIC, contains only the first 34 nucleotides of exon 2 by the use of an alternative 5' splice site, resulting in a premature termination codon and possible nonsense-mediated decay of IIC mRNA. Low levels of the IIC isoform were detected by RT-PCR and Southern analysis of COL2A1 cDNA amplified from differentiating rabbit and human MSCs. A second novel transcript, named IID, arises by the use of another 5' alternative splice site in intron 2. The IID isoform contains exon 2 plus 3 nucleotides, resulting in the insertion of an additional amino acid. The IID isoform was co-expressed with the IIA isoform during chondrogenesis, and was approximately one-third as abundant. Deletion of the IIC alternative 5' splice site from a COL2A1 mini-gene construct resulted in a significant increase in the IIA:IIB ratio. A mutant mini-gene that inhibited production of the IID isoform, however, had differential effects on the production of the IIA and IIB isoforms: this was apparently related to the differentiation status of the cell type used. These data suggest that COL2A1 mRNA abundance and other aspects of chondrocyte differentiation may be regulated by the use of these previously undetermined alternative splice sites.

Indexed as

Alternative SplicingGene Expression RegulationAnimalsBase SequenceCartilageCell DifferentiationChondrocytesChondrogenesisCollagen Type IIHumansMesenchymal Stem CellsMolecular Sequence DataProtein IsoformsProtein Structure, TertiaryRabbitsSequence Homology, Nucleic AcidCOL2A1 protein, humanCollagen Type IIProtein Isoforms

Identifiers

PMID18023161
PMCPMC2364638
OpenAlexW1990146163

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.