Evidence map›Paper›PMID 18005986›Full record

ArticleJournal of molecular biology2008

Complex of a protective antibody with its Ebola virus GP peptide epitope: unusual features of a V lambda x light chain.

Jeffrey E Lee, Ana Kuehne, Dafna M Abelson, Marnie L Fusco, Mary Kate Hart, Erica Ollmann Saphire

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 56 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jeffrey E LeeDepartment of Immunology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Ana Kuehne
Dafna M Abelson
Marnie L Fusco
Mary Kate Hart
Erica Ollmann Saphire
Scripps Research Institute · USUnited States Army Medical Research Institute of Infectious Diseases · US

Funding

EBOLA VIRAL GLYCOPROTEINS: STRUCTURAL ANALYSISR01AI067927 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI SAPHIRE, ERICA OLLMANN · 2006 to 2013
$3.6M
Structural Studies of Ebola Viral PathogenesisR21AI053423 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI SAPHIRE, ERICA OLLMANN · 2002 to 2003
$556k
NIAID NIH HHS AI053423NIAID NIH HHS AI067927NIAID NIH HHS R01 AI067927
6 · The paper itself

Abstract

13F6-1-2 is a murine monoclonal antibody that recognizes the heavily glycosylated mucin-like domain of the Ebola virus virion-attached glycoprotein (GP) and protects animals against lethal viral challenge. Here we present the crystal structure, at 2.0 A, of 13F6-1-2 in complex with its Ebola virus GP peptide epitope. The GP peptide binds in an extended conformation, anchored primarily by interactions with the heavy chain. Two GP residues, Gln P406 and Arg P409, make extensive side-chain hydrogen bond and electrostatic interactions with the antibody and are likely critical for recognition and affinity. The 13F6-1-2 antibody utilizes a rare V lambda(x) light chain. The three light-chain complementarity-determining regions do not adopt canonical conformations and represent new classes of structures distinct from V kappa and other V lambda light chains. In addition, although V lambda(x) had been thought to confer specificity, all light-chain contacts are mediated through germ-line-encoded residues. This structure of an antibody that protects against the Ebola virus now provides a framework for humanization and development of a postexposure immunotherapeutic.

Indexed as

EpitopesAmino Acid SequenceAmino Acid SubstitutionAnimalsAntibodies, MonoclonalArginineBase SequenceCodon, TerminatorDisulfidesEbolavirusGlycoproteinsHumansHydrogen BondingImmunoglobulin Fab FragmentsImmunoglobulin lambda-ChainsKineticsAntibodies, MonoclonalArginineCodon, TerminatorDisulfidesEpitopesGlycoproteinsImmunoglobulin Fab FragmentsImmunoglobulin lambda-Chains

Identifiers

PMID18005986
PMCPMC2173910
OpenAlexW2089953400

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.