Evidence map›Paper›PMID 18003659›Full record

ArticleNucleic acids research2008

SMAD3 prevents binding of NKX2.1 and FOXA1 to the SpB promoter through its MH1 and MH2 domains.

Parviz Minoo, Lingyan Hu, Nianling Zhu, Zea Borok, Saverio Bellusci, John Groffen, Dimitris Kardassis, Changgong Li

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
  3. Abhd2, a Candidate Gene Regulating Airway Remodeling in COPD via TGF-β.International journal of chronic obstructive pulmonary disease · 2024
    Article
  4. Article
  5. TGF-β Signaling in Lung Health and Disease.International journal of molecular sciences · 2018
    Review
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  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Parviz MinooDepartment of Pediatrics, Division of Neonatology, Will Rogers Institute Pulmonary Research Center, University of Southern California Keck School of Medicine, Los Angeles, CA, USA. minoo@usc.edu
Lingyan Hu
Nianling Zhu
Zea Borok
Saverio Bellusci
John Groffen
Dimitris Kardassis
Changgong Li
University of Crete · GRUniversity of Southern California · USRogers (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mechanisms of gene repression by transforming growth factor-beta (TGF-beta) are not well understood. TGF-beta represses transcription of pulmonary surfactant protein-B gene in lung epithelial cells. Repression is mediated by SMAD3 through interactions with NKX2.1 and FOXA1, two key transcription factors that are positive regulators of SpB transcription. In this study, we found that SMAD3 interacts through its MAD domains, MH1 and MH2 with NKX2.1 and FOXA1 proteins. The sites of interaction on NKX2.1 are located within the NH2 and COOH domains, known to be involved in transactivation function. In comparison, weaker interaction of FOXA1 winged helix, and the NH(2)-terminal domains was documented with SMAD3. Both in vitro studies and in vivo ChIP assays show that interaction of SMAD3 MH1 and MH2 domains with NKX2.1 and FOXA1 results in reduced binding of NKX2.1 and FOXA1 to their cognate DNA-binding sites, and diminished promoter occupancy within the SpB promoter. Thus, these studies reveal for the first time a mechanism of TGF-beta-induced SpB gene repression that involves interactions between specific SMAD3 domains and the corresponding functional sites on NKX2.1 and FOXA1 transcription factors.

Indexed as

AnimalsBinding SitesCell LineHepatocyte Nuclear Factor 3-alphaHumansImmunoprecipitationNuclear ProteinsPromoter Regions, GeneticProtein Structure, TertiaryPulmonary Surfactant-Associated Protein BRatsRepressor ProteinsSmad3 ProteinThyroid Nuclear Factor 1Transcription FactorsTransforming Growth Factor betaFoxa1 protein, ratHepatocyte Nuclear Factor 3-alphaNkx2-1 protein, ratNuclear ProteinsPulmonary Surfactant-Associated Protein BRepressor ProteinsSmad3 ProteinThyroid Nuclear Factor 1Transcription FactorsTransforming Growth Factor beta

Identifiers

PMID18003659
PMCPMC2248754
OpenAlexW2135836421

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.