ReviewGenome biology2007
Making the most of high-throughput protein-interaction data.
Review in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
18 citing papers in PubMed.
- Computational analysis of protein interaction networks for infectious diseases.Briefings in bioinformatics · 2016Review
- Towards a Hierarchical Strategy to Explore Multi-Scale IP/MS Data for Protein Complexes.PloS one · 2015Article
- Integration strategy is a key step in network-based analysis and dramatically affects network topological properties and inferring outcomes.BioMed research international · 2014Article
- Inferring protein-protein interaction complexes from immunoprecipitation data.BMC research notes · 2013Article
- Characterization of known protein complexes using k-connectivity and other topological measures.F1000Research · 2013Article
- Construction of a highly flexible and comprehensive gene collection representing the ORFeome of the human pathogen Chlamydia pneumoniae.BMC genomics · 2012Article
- Next-generation sequencing coupled with a cell-free display technology for high-throughput production of reliable interactome data.Scientific reports · 2012Article
- Categorizing biases in high-confidence high-throughput protein-protein interaction data sets.Molecular & cellular proteomics : MCP · 2011Article
- SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds.BMC bioinformatics · 2011Article
- Quantitative maps of genetic interactions in yeast - comparative evaluation and integrative analysis.BMC systems biology · 2011Article
- Assembling a protein-protein interaction map of the SSU processome from existing datasets.PloS one · 2011Article
- Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology.PLoS genetics · 2011Article
- Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough.PloS one · 2011Article
- Integrating diverse biological and computational sources for reliable protein-protein interactions.BMC bioinformatics · 2010Article
- Computational approaches for detecting protein complexes from protein interaction networks: a survey.BMC genomics · 2010Article
- From evidence to inference: probing the evolution of protein interaction networks.HFSP journal · 2009Article
- Literature-curated protein interaction datasets.Nature methods · 2009Article
- Rich can get poor: conversion of hub to non-hub proteins.Systems and synthetic biology · 2008Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We review the estimation of coverage and error rate in high-throughput protein-protein interaction datasets and argue that reports of the low quality of such data are to a substantial extent based on misinterpretations. Probabilistic statistical models and methods can be used to estimate properties of interest and to make the best use of the available data.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.