Evidence map›Paper›PMID 18000829›Full record

ArticleDevelopmental neurobiology2008

Otoc1: a novel otoconin-90 ortholog required for otolith mineralization in zebrafish.

Jessica A Petko, Bonny B Millimaki, Victor A Canfield, Bruce B Riley, Robert Levenson

Open access · greenAbstract read
In one paragraph

Article in Developmental neurobiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Knockout ofBiomedicines · 2024
    Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Mechanisms of otoconia and otolith development.Developmental dynamics : an official publication of the American Association of Anatomists · 2015
    Review
  14. Article
  15. Article
  16. Article
  17. Expression, functional, and structural analysis of proteins critical for otoconia development.Developmental dynamics : an official publication of the American Association of Anatomists · 2010
    Article
  18. Article
  19. Article
  20. Sparc protein is required for normal growth of zebrafish otoliths.Journal of the Association for Research in Otolaryngology : JARO · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jessica A PetkoDepartment of Pharmacology, Penn State University College of Medicine, Hershey, PA 17033, USA.
Bonny B Millimaki
Victor A Canfield
Bruce B Riley
Robert Levenson
Pennsylvania State University · USTexas A&M University · US

Funding

Presynaptic Mechanisms of D1 Receptor Effects on Cortical FunctionP50MH068789 · NIMH · YALE UNIVERSITY · PI MCCORMICK, DAVID · 2004 to 2008
$10.3M
NIMH NIH HHS MH 068789NIMH NIH HHS P50 MH068789
6 · The paper itself

Abstract

Within the vestibular system of virtually all vertebrate species, gravity and linear acceleration are detected via coupling of calcified masses to the cilia of mechanosensory hair cells. The mammalian ear contains thousands of minute biomineralized particles called otoconia, whereas the inner ear of teleost fish contains three large ear stones called otoliths that serve a similar function. Otoconia and otoliths are composed of calcium carbonate crystals condensed on a core protein lattice. Otoconin-90 (Oc90) is the major matrix protein of mammalian and avian otoconia, while otolith matrix protein (OMP) is the most abundant matrix protein found in the otoliths of teleost fish. We have identified a novel gene, otoc1, which encodes the zebrafish ortholog of Oc90. Expression of otoc1 was detected in the ear between 15 hpf and 72 hpf, and was restricted primarily to the macula and the developing epithelial pillars of the semicircular canals. Expression of otoc1 was also detected in epiphysis, optic stalk, midbrain, diencephalon, flexural organ, and spinal cord. During embryogenesis, expression of otoc1 mRNA preceded the appearance of omp-1 transcripts. Knockdown of otoc1 mRNA translation with antisense morpholinos produced a variety of aberrant otolith phenotypes. Our results suggest that Otoc1 may serve to nucleate calcium carbonate mineralization of aragonitic otoliths.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBrainCalcium-Binding ProteinsCalcium CarbonateDown-RegulationExtracellular Matrix ProteinsGene Expression Regulation, DevelopmentalMineralsMolecular Sequence DataOtolithic MembranePhylogenyProtein BiosynthesisRNA, AntisenseRNA, MessengerCalcium-Binding ProteinsCalcium CarbonateExtracellular Matrix ProteinsMineralsOc90 protein, mouseOc90 protein, zebrafishRNA, AntisenseRNA, MessengerZebrafish Proteins

Identifiers

PMID18000829
PMCPMC2730775
OpenAlexW2023286906

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.