Evidence map›Paper›PMID 17996647›Full record

ArticleCancer cell2007

Role of nucleosomal occupancy in the epigenetic silencing of the MLH1 CpG island.

Joy C Lin, Shinwu Jeong, Gangning Liang, Daiya Takai, Merhnaz Fatemi, Yvonne C Tsai, Gerda Egger, Einav Nili Gal-Yam, Peter A Jones

Open access · bronzeAbstract read
In one paragraph

Article in Cancer cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 203 citations in OpenAlex.

  1. Article
  2. Review
  3. Roles of transposable elements and DNA methylation in the formation of CpG islands and CpG-depleted regulatory elements.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
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  7. Review
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  12. Article
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  14. High-Resolution Mapping of Transcription Initiation in the Asexual Stages ofFrontiers in cellular and infection microbiology · 2020
    Article
  15. Article
  16. Epigenetic Mechanisms of Pancreatobiliary Fibrosis.Current treatment options in gastroenterology · 2019
    Review
  17. Article
  18. Current Insights into Oral Cancer Epigenetics.International journal of molecular sciences · 2018
    Review
  19. Genetic and epigenetic alterations in normal tissues have differential impacts on cancer risk among tissues.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Article

41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Joy C LinDepartment of Urology, Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA.
Shinwu Jeong
Gangning Liang
Daiya Takai
Merhnaz Fatemi
Yvonne C Tsai
Gerda Egger
Einav Nili Gal-Yam
Peter A Jones
University of Southern California · US

Funding

MECHANISMS OF DE NOVO METHYLATION IN CANCERR01CA082422 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI JONES, PETER A · 1999 to 2016
$5.1M
NCI NIH HHS R01 CA082422NCI NIH HHS R01 CA82422
6 · The paper itself

Abstract

Epigenetic silencing of tumor suppressor genes is generally thought to involve DNA cytosine methylation, covalent modifications of histones, and chromatin compaction. Here, we show that silencing of the three transcription start sites in the bidirectional MLH1 promoter CpG island in cancer cells involves distinct changes in nucleosomal occupancy. Three nucleosomes, almost completely absent from the start sites in normal cells, are present on the methylated and silenced promoter, suggesting that epigenetic silencing may be accomplished by the stable placement of nucleosomes into previously vacant positions. Activation of the promoter by demethylation with 5-aza-2'-deoxycytidine involves nucleosome eviction. Epigenetic silencing of tumor suppressor genes may involve heritable changes in nucleosome occupancy enabled by cytosine methylation.

Indexed as

CpG IslandsEpigenesis, GeneticGene SilencingGenes, Tumor SuppressorAdaptor Proteins, Signal TransducingCell Line, TumorChromatinCytosineDeoxyribonuclease IDNA MethylationGene Expression Regulation, NeoplasticHumansModels, GeneticMutL Protein Homolog 1Nuclear ProteinsNucleosomesAdaptor Proteins, Signal TransducingChromatinCytosineDeoxyribonuclease IMLH1 protein, humanMutL Protein Homolog 1Nuclear ProteinsNucleosomes

Identifiers

PMID17996647
PMCPMC4657456
OpenAlexW2108010006

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.