ArticleResearch in microbiology2007
Structure and evolution of gene regulatory networks in microbial genomes.
Article in Research in microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
23 citing papers in PubMed.
- PredPromoter-MF(2L): A Novel Approach of Promoter Prediction Based on Multi-source Feature Fusion and Deep Forest.Interdisciplinary sciences, computational life sciences · 2022Article
- System Principles Governing the Organization, Architecture, Dynamics, and Evolution of Gene Regulatory Networks.Frontiers in bioengineering and biotechnology · 2022Article
- Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework.Briefings in bioinformatics · 2021Article
- iPromoter-2L2.0: Identifying Promoters and Their Types by Combining Smoothing Cutting Window Algorithm and Sequence-Based Features.Molecular therapy. Nucleic acids · 2019Article
- RAIL: A new tool for defining bacterial promoter regions.Journal of bacteriology · 2018Article
- Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome.PLoS computational biology · 2015Article
- Adaptive Evolution of Thermotoga maritima Reveals Plasticity of the ABC Transporter Network.Applied and environmental microbiology · 2015Article
- Microbial biofilm as a smart material.Sensors (Basel, Switzerland) · 2015Article
- Collective sensing and collective responses in quorum-sensing bacteria.Journal of the Royal Society, Interface · 2015Review
- Enterococcus faecalis reconfigures its transcriptional regulatory network activation at different copper levels.Metallomics : integrated biometal science · 2014Article
- IntergenicDB: a database for intergenic sequences.Bioinformation · 2014Article
- The nucleoid-associated proteins H-NS and FIS modulate the DNA supercoiling response of the pel genes, the major virulence factors in the plant pathogen bacterium Dickeya dadantii.Nucleic acids research · 2012Article
- A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation.Nucleic acids research · 2012Article
- Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks.Advances in microbial physiology · 2012Review
- Benchmarks for flexible and rigid transcription factor-DNA docking.BMC structural biology · 2011Article
- Rational design of an artificial genetic switch: Co-option of the H-NS-repressed proU operon by the VirB virulence master regulator.Journal of bacteriology · 2011Article
- Dissecting the expression patterns of transcription factors across conditions using an integrated network-based approach.Nucleic acids research · 2010Article
- Evolution of gene regulatory networks by fluctuating selection and intrinsic constraints.PLoS computational biology · 2010Article
- Fractal topology of gene promoter networks at phase transitions.Gene regulation and systems biology · 2010Article
- Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin.Molecular biology and evolution · 2010Article
Corrections and comments
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Authors and funding
2 authors.
Funding
Abstract
With the availability of genome sequences for hundreds of microbial genomes, it has become possible to address several questions from a comparative perspective to understand the structure and function of regulatory systems, at least in model organisms. Recent studies have focused on topological properties and the evolution of regulatory networks and their components. Our understanding of natural networks is paving the way to embedding synthetic regulatory systems into organisms, allowing us to expand the natural diversity of living systems to an extent we had never before anticipated.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.