ArticleGenome biology2007
Inferring genome-scale rearrangement phylogeny and ancestral gene order: a Drosophila case study.
Article in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
17 citing papers in PubMed.
- A region of suppressed recombination misleads neoavian phylogenomics.Proceedings of the National Academy of Sciences of the United States of America · 2024Article
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- Phylogeny of the GenusGenetics · 2018Review
- ProCARs: Progressive Reconstruction of Ancestral Gene Orders.BMC genomics · 2015Article
- Chromosome number reduction in Eremothecium coryli by two telomere-to-telomere fusions.Genome biology and evolution · 2014Article
- Phylo SI: a new genome-wide approach for prokaryotic phylogeny.Nucleic acids research · 2014Article
- Whole genome phylogenies for multiple Drosophila species.BMC research notes · 2012Article
- Article
- A new chromosomal phylogeny supports the repeated origin of vectorial capacity in malaria mosquitoes of the Anopheles gambiae complex.PLoS pathogens · 2012Article
- Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila.Genome research · 2010Article
- Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome.PLoS genetics · 2009Article
- Reconstructing the history of yeast genomes.PLoS genetics · 2009Article
- Evolutionary origin and genomic organisation of runt-domain containing genes in arthropods.BMC genomics · 2008Article
- A methodological framework for the reconstruction of contiguous regions of ancestral genomes and its application to mammalian genomes.PLoS computational biology · 2008Article
- Improving reversal median computation using commuting reversals and cycle information.Journal of computational biology : a journal of computational molecular cell biology · 2008Article
- Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps.Genetics · 2008Article
- Article
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
A simple, fast, and biologically inspired computational approach for inferring genome-scale rearrangement phylogeny and ancestral gene order has been developed. This has been applied to eight Drosophila genomes. Existing techniques are either limited to a few hundred markers or a small number of taxa. This analysis uses over 14,000 genomic loci and employs discrete elements consisting of pairs of homologous genetic elements. The results provide insight into evolutionary chromosomal dynamics and synteny analysis, and inform speciation studies.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.