Evidence map›Paper›PMID 17988385›Full record

ArticleGenome biology2007

Gene expression atlas of the mouse central nervous system: impact and interactions of age, energy intake and gender.

Xiangru Xu, Ming Zhan, Wenzhen Duan, Vinayakumar Prabhu, Randall Brenneman, William Wood, Jeff Firman, Huai Li, Peisu Zhang, Carol Ibe and 5 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 101 citations in OpenAlex.

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  15. NADNature communications · 2019
    Article
  16. Genetic and epigenetic regulation of human aging and longevity.Biochimica et biophysica acta. Molecular basis of disease · 2019
    Review
  17. Article
  18. Review
  19. Dysregulation of Intracellular CaMolecular neurobiology · 2018
    Article
  20. Review

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Xiangru XuLaboratory of Neurosciences, National Institute on Aging Intramural Research Program, 5600 Nathan Shock Drive, Baltimore, MD 21224, USA. xuxi@grc.nia.nih.gov
Ming Zhan
Wenzhen Duan
Vinayakumar Prabhu
Randall Brenneman
William Wood
Jeff Firman
Huai Li
Peisu Zhang
Carol Ibe
Alan B Zonderman
Dan L Longo
Suresh Poosala
Kevin G Becker
Mark P Mattson
National Institute on Aging · USInstitute on Aging · US

Funding

Analysis of complex biological systems by microarray based gene expressionZICAG000616 · NIA · NATIONAL INSTITUTE ON AGING · PI DE, SUPRIYO · 2009 to 2025
$15.5M
Bioinformatics Service and ResearchZICAG000619 · NIA · NATIONAL INSTITUTE ON AGING · PI ZHAN, MING · 2009 to 2010
$2.2M
Analysis of complex biological systems by microarray based gene expressionZ01AG000616 · NIA · NATIONAL INSTITUTE ON AGING · PI BECKER, KEVIN · 2008 to 2008
$886k
BioinformaticsZ01AG000619 · NIA · NATIONAL INSTITUTE ON AGING · PI ZHAN, MING · 2008 to 2008
$487k
Intramural NIH HHS
6 · The paper itself

Abstract

backgroundThe structural and functional complexity of the mammalian central nervous system (CNS) is organized and modified by complicated molecular signaling processes that are poorly understood.

resultsWe measured transcripts of 16,896 genes in 5 CNS regions from cohorts of young, middle-aged and old male and female mice that had been maintained on either a control diet or a low energy diet known to retard aging. Each CNS region (cerebral cortex, hippocampus, striatum, cerebellum and spinal cord) possessed its own unique transcriptome fingerprint that was independent of age, gender and energy intake. Less than 10% of genes were significantly affected by age, diet or gender, with most of these changes occurring between middle and old age. The transcriptome of the spinal cord was the most responsive to age, diet and gender, while the striatal transcriptome was the least responsive. Gender and energy restriction had particularly robust influences on the hippocampal transcriptome of middle-aged mice. Prominent functional groups of age- and energy-sensitive genes were those encoding proteins involved in DNA damage responses (Werner and telomere-associated proteins), mitochondrial and proteasome functions, cell fate determination (Wnt and Notch signaling) and synaptic vesicle trafficking.

conclusionMouse CNS transcriptomes responded to age, energy intake and gender in a regionally distinctive manner. The systematic transcriptome dataset also provides a window into mechanisms of age-, diet- and sex-related CNS plasticity and vulnerability.

Indexed as

Age FactorsEnergy IntakeGene Expression ProfilingSex FactorsAnimalsCentral Nervous SystemFemaleMaleMiceNeuronal PlasticityRNA, MessengerRNA, Messenger

Identifiers

PMID17988385
PMCPMC2258177
OpenAlexW2163724452

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.