Evidence map›Paper›PMID 17983591›Full record

ArticleBiochemical and biophysical research communications2008

Transcriptome of Escherichia coli K1 bound to human brain microvascular endothelial cells.

Yi Xie, Geetha Parthasarathy, Francescopaolo Di Cello, Ching-Hao Teng, Maneesh Paul-Satyaseela, Kwang Sik Kim

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact, top 89% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. YbdO Promotes the Pathogenicity ofInternational journal of molecular sciences · 2022
    Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Yi XieDivision of Pediatric Infectious Diseases, Johns Hopkins University School of Medicine, 720 Rutland Avenue, Ross 1109, Baltimore, MD 21205, USA.
Geetha Parthasarathy
Francescopaolo Di Cello
Ching-Hao Teng
Maneesh Paul-Satyaseela
Kwang Sik Kim
Johns Hopkins Medicine · USJohns Hopkins University · USNational Health Research Institutes · TW

Funding

PATHOGENESIS OF NEONATAL MENINGITISR01NS026310 · NINDS · JOHNS HOPKINS UNIVERSITY · PI KIM, KWANG S · 1988 to 2008
$3.6M
Genome-wide screening of E. coli for bacteremiaR21AI071894 · NIAID · JOHNS HOPKINS UNIVERSITY · PI KIM, KWANG S · 2006 to 2007
$444k
NIAID NIH HHS AI 71894NIAID NIH HHS R21 AI071894NINDS NIH HHS R01 NS026310NINDS NIH HHS R01-NS 26310
6 · The paper itself

Abstract

Escherichia coli K1 is the most common Gram-negative organism causing neonatal meningitis. Binding to human brain microvascular endothelial cells (HBMEC) is an essential step for E. coli K1 traversal of the blood-brain barrier. In this study, we examined expression profiles of E. coli K1 strain RS218 during its binding to HBMEC. Comparison of HBMEC-bound E. coli K1 with collagen-bound E. coli revealed more than one hundred genes whose expression patterns were significantly changed in HBMEC-bound E. coli K1, but not in collagen-bound E. coli K1. These genes are involved mainly in cell surface decorations, cellular function, and nitrogen metabolism. The roles of several representative genes including frdA, clpB, carA, and ompT in HBMEC binding were verified with their isogenic mutants, which exhibited significantly less HBMEC binding capability compared to that of the parent strain. This transcriptome analysis provided us with the first genomic-level view of E. coli and HBMEC interactions.

Indexed as

Gene Expression ProfilingBrainEndothelium, VascularEscherichia coliHumans

Identifiers

PMID17983591
PMCPMC2744299
OpenAlexW2022243347

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.