Evidence map›Paper›PMID 17982461›Full record

ArticleNature methods2007

In situ proteolysis for protein crystallization and structure determination.

Aiping Dong, Xiaohui Xu, Aled M Edwards, Midwest Center for Structural Genomics, Structural Genomics Consortium, Changsoo Chang, Maksymilian Chruszcz, Marianne Cuff, Marcin Cymborowski, Rosa Di Leo and 61 more

Abstract read
In one paragraph

Article in Nature methods, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 136 papers.

0numbers the graph read from it
0cells of the map it votes in
136citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

136 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Structural and functional validation of a highly specific Smurf2 inhibitor.Protein science : a publication of the Protein Society · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. T4 lysozyme-facilitated crystallization of the human molybdenum cofactor-dependent enzyme mARC.Acta crystallographica. Section F, Structural biology communications · 2018
    Article
  20. Article

76 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

71 authors.

Aiping DongStructural Genomics Consortium, University of Toronto, 100 College Street, Toronto, Ontario M5G 1L5, Canada.
Xiaohui Xu
Aled M Edwards
Midwest Center for Structural Genomics
Structural Genomics Consortium
Changsoo Chang
Maksymilian Chruszcz
Marianne Cuff
Marcin Cymborowski
Rosa Di Leo
Olga Egorova
Elena Evdokimova
Ekaterina Filippova
Jun Gu
Jennifer Guthrie
Alexandr Ignatchenko
Andrzej Joachimiak
Natalie Klostermann
Youngchang Kim
Yuri Korniyenko
Wladek Minor
Qiuni Que
Alexei Savchenko
Tatiana Skarina
Kemin Tan
Alexander Yakunin
Adelinda Yee
Veronica Yim
Rongguang Zhang
Hong Zheng
Masato Akutsu
Cheryl Arrowsmith
George V Avvakumov
Alexey Bochkarev
Lars-Göran Dahlgren
Sirano Dhe-Paganon
Slav Dimov
Ludmila Dombrovski
Patrick Finerty
Susanne Flodin
Alex Flores
Susanne Gräslund
Martin Hammerström
Maria Dolores Herman
Bum-Soo Hong
Raymond Hui
Ida Johansson
Yongson Liu
Martina Nilsson
Lyudmila Nedyalkova
Pär Nordlund
Tomas Nyman
Jinrong Min
Hui Ouyang
Hee-won Park
Chao Qi
Wael Rabeh
Limin Shen
Yang Shen
Deepthi Sukumard
Wolfram Tempel
Yufeng Tong
Lionel Tresagues
Masoud Vedadi
John R Walker
Johan Weigelt
Martin Welin
Hong Wu
Ting Xiao
Hong Zeng
Haizhong Zhu

Funding

The Midwest Center for Structural GenomicsU54GM074942 · NIGMS · UNIVERSITY OF CHICAGO · PI JOACHIMIAK, ANDRZEJ · 2005 to 2009
$51.0M
NIGMS NIH HHS GM074942NIGMS NIH HHS U54 GM074942Wellcome Trust
6 · The paper itself

Abstract

We tested the general applicability of in situ proteolysis to form protein crystals suitable for structure determination by adding a protease (chymotrypsin or trypsin) digestion step to crystallization trials of 55 bacterial and 14 human proteins that had proven recalcitrant to our best efforts at crystallization or structure determination. This is a work in progress; so far we determined structures of 9 bacterial proteins and the human aminoimidazole ribonucleotide synthetase (AIRS) domain.

Indexed as

CrystallizationCrystallographyPeptide HydrolasesProtein ConformationProteinsPeptide HydrolasesProteins

Identifiers

PMID17982461
PMCPMC3366506

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.