Evidence map›Paper›PMID 17981760›Full record

ReviewFrontiers in bioscience : a journal and virtual library2008

Prolyl 4-hydroxylase activity-responsive transcription factors: from hydroxylation to gene expression and neuroprotection.

Ambreena Siddiq, Leila R Aminova, Rajiv R Ratan

Open access · bronzeAbstract readReview
In one paragraph

Review in Frontiers in bioscience : a journal and virtual library, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Article
  3. Hypoxia-induced alternative splicing: the 11th Hallmark of Cancer.Journal of experimental & clinical cancer research : CR · 2020
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. The role of iron in learning and memory.Advances in nutrition (Bethesda, Md.) · 2011
    Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Essential role for zinc-triggered p75NTR activation in preconditioning neuroprotection.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ambreena SiddiqBurke Medical Research Institute, White Plains, New York 10605, USA. ams2028@med.cornell.edu
Leila R Aminova
Rajiv R Ratan
Cornell University · US

Funding

Activated Sugars, Oligosaccharides and Glycans for Antiviral ResearchR44GM140755 · NIGMS · MIDWEST BIOPROCESSING CENTER, LLC · PI AMINOVA, LEILA · 2021 to 2022
$1.9M
Arginase and Regulation of Nitric Oxide Synthase in ALSR01NS040591 · NINDS · WINIFRED MASTERSON BURKE MED RES INST · PI RATAN, RAJIV R · 2001 to 2004
$1.5M
High-yield production of GDP-fucose for fucosylation of moleculesR44GM106459 · NIGMS · ZUCHEM, INC. · PI AMINOVA, LEILA · 2015 to 2016
$1.3M
Activated Sugars for Drug DiscoveryR44GM079004 · NIGMS · ZUCHEM, INC. · PI AMINOVA, LEILA · 2009 to 2010
$891k
Oligosaccharides Against Enteric InfectionsR01HD061924 · NICHD · ZUCHEM, INC. · PI AMINOVA, LEILA · 2009 to 2010
$664k
Engineering Methylotrophic Yeast for in vivo Production of Deoxysugars from DHAPR43GM139456 · NIGMS · MIDWEST BIOPROCESSING CENTER, LLC · PI AMINOVA, LEILA · 2020 to 2020
$193k
High-yield production of GDP-fucose for fucosylation of moleculesR43GM106459 · NIGMS · ZUCHEM, INC. · PI AMINOVA, LEILA · 2013 to 2013
$187k
Activated hexosamines from chitin for production of important oligosaccharidesR43GM110916 · NIGMS · ZUCHEM, INC. · PI AMINOVA, LEILA · 2014 to 2014
$168k
Integrated System for Rapid Production of Activated Sugars and Glycosylated MoleculesR43GM126672 · NIGMS · ZUCHEM, INC. · PI AMINOVA, LEILA · 2018 to 2018
$147k
NICHD NIH HHS R01 HD061924NIGMS NIH HHS R43 GM106459NIGMS NIH HHS R43 GM110916NIGMS NIH HHS R43 GM126672NIGMS NIH HHS R43 GM139456NIGMS NIH HHS R44 GM079004NIGMS NIH HHS R44 GM106459NIGMS NIH HHS R44 GM140755NINDS NIH HHS R01 NS040591
6 · The paper itself

Abstract

Most homeostatic processes including gene transcription occur as a result of deviations in physiological tone that threatens the survival of the organism. A prototypical homeostatic stress response includes changes in gene expression following alterations in oxygen, iron or 2-oxoglutarate levels. Each of these cofactors plays an important role in cellular metabolism. Accordingly, a family of enzymes known as the Prolyl 4-hydroxylase (PHD) enzymes are a group of dioxygenases that have evolved to sense changes in 2-oxoglutarate, oxygen and iron via changes in enzyme activity. Indeed, PHDs are a part of an established oxygen sensor system that regulates transcriptional regulation of hypoxia/stress-regulated genes and thus are an important component of events leading to cellular rescue from oxygen, iron or 2-oxoglutarate deprivations. The ability of PHD activity to regulate homeostatic responses to oxygen, iron or 2-oxoglutarate metabolism has led to the development of small molecule inhibitors of the PHDs as a strategy for activating or augmenting cellular stress responses. These small molecules are proving effective in preclinical models of stroke and Parkinson's disease. However the precise protective pathways engaged by PHD inhibition are only beginning to be defined. In the current review, we summarize the role of iron, 2-oxoglutarate and oxygen in the PHD catalyzed hydroxylation reaction and provide a brief discussion of some of the transcription factors that play an effective role in neuroprotection against oxidative stress as a result of changes in PHD activity.

Indexed as

Gene Expression ProfilingGene Expression RegulationTranscription FactorsAnimalsCyclic AMP Response Element-Binding ProteinHumansHydroxylationHypoxia-Inducible Factor 1IronKetoglutaric AcidsNeuroprotective AgentsOxygenProcollagen-Proline DioxygenaseProtein BindingTranscription Factor AP-1Cyclic AMP Response Element-Binding ProteinHypoxia-Inducible Factor 1IronKetoglutaric AcidsNeuroprotective AgentsOxygenProcollagen-Proline DioxygenaseTranscription Factor AP-1Transcription Factors

Identifiers

PMID17981760
PMCPMC2570096
OpenAlexW1990769415

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.