Evidence map›Paper›PMID 17980664›Full record

ArticleTuberculosis (Edinburgh, Scotland)2008

Evaluation of a semi-automated reporter phage assay for susceptibility testing of Mycobacterium tuberculosis isolates in South Africa.

Niaz Banaiee, Vanessa January, Charmaine Barthus, Maureen Lambrick, Denise Roditi, Marcel A Behr, William R Jacobs, Lafras M Steyn

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Tuberculosis (Edinburgh, Scotland), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular Genetics of Mycobacteriophages.Microbiology spectrum · 2014
    Article
  4. Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Niaz BanaieeDepartment of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA. nbanaiee@stanford.edu
Vanessa January
Charmaine Barthus
Maureen Lambrick
Denise Roditi
Marcel A Behr
William R Jacobs
Lafras M Steyn
University of Cape Town · ZAGroote Schuur Hospital · ZAHoward Hughes Medical Institute · USMcGill University Health Centre · CAStanford University · US

Funding

MOLECULAR GENETIC ANALYSIS OF MYCOBACTERIUM TUBERCULOSISR01AI026170 · NIAID · YESHIVA UNIVERSITY · PI JACOBS, WILLIAM ROBERT · 1989 to 2022
$7.1M
INH-induced lysis of the HIV opportunistic infection, M. tuberculosisR01AI043268 · NIAID · YESHIVA UNIVERSITY · PI JACOBS, WILLIAM ROBERT · 1998 to 2008
$5.2M
INH-induced lysis of Mycobacterium tuberculosisR21AI043268 · NIAID · YESHIVA UNIVERSITY · PI JACOBS, WILLIAM ROBERT · 2003 to 2003
$633k
Identification/Characterization of M. tuberculosis GenesK08AI061105 · NIAID · STANFORD UNIVERSITY · PI BANAIEE, NIAZ · 2004 to 2007
$498k
NIAID NIH HHS AI43268NIAID NIH HHS K08 AI061105NIAID NIH HHS R01 AI026170NIAID NIH HHS R01 AI043268NIAID NIH HHS R01 AI26170NIAID NIH HHS R21 AI043268
6 · The paper itself

Abstract

In a prospective study conducted by laboratory technologists in a diagnostic laboratory in Cape Town, South Africa, a semi-automated phage-based antibiotic susceptibility assay was implemented and the performance of the luciferase reporter mycobacteriophage (LRP) system for susceptibility testing of clinical Mycobacterium tuberculosis complex (MTC) isolates against rifampin and isoniazid was evaluated. Two hundred consecutive clinical MGIT cultures of MTC species were included in this study. Antibiotic susceptibility assays were set up manually for the LRP and BACTEC radiometric systems (BACTEC) and read in a plate luminometer and the BACTEC 460 instrument, respectively. Discrepant susceptibility results were resolved by the conventional agar proportion method. Of the 200 secondary cultures prepared for this study, 9 (4.5%) were lost to contamination (LRP 4, BACTEC 1, both 4). All of the remaining 191 cultures underwent susceptibility testing by both methods and the overall agreement between the LRP and BACTEC was 98.4% (rifampin 100%; isoniazid 96.9%). Of the 6 discrepant cultures tested by the agar proportion method, 2 gave results in agreement with the LRP. The sensitivity of the LRP for detection of drug-resistant isolates was 100% for both rifampin (n=9) and isoniazid (n=12). The median turnaround time for susceptibility testing was 2 days with the LRP and 9 days with BACTEC. In conclusion, the semi-automated LRP-based assay offers a rapid and practical approach for accurate susceptibility testing of M. tuberculosis cultures in diagnostic laboratories with limited financial resources, but with competent technologists.

Indexed as

Genes, ReporterAntitubercular AgentsBiological AssayHumansIsoniazidLuciferasesMicrobial Sensitivity TestsMycobacteriophagesMycobacterium tuberculosisProspective StudiesRifampinSouth AfricaTuberculosisAntitubercular AgentsIsoniazidLuciferasesRifampin

Identifiers

PMID17980664
PMCPMC3677954
OpenAlexW2040058525

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.