Evidence map›Paper›PMID 17980632›Full record

ArticleImmunity2007

S-S synapsis during class switch recombination is promoted by distantly located transcriptional elements and activation-induced deaminase.

Robert Wuerffel, Lili Wang, Fernando Grigera, John Manis, Erik Selsing, Thomas Perlot, Frederick W Alt, Michel Cogne, Eric Pinaud, Amy L Kenter

Open access · bronzeAbstract read
In one paragraph

Article in Immunity, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 148 papers.

0numbers the graph read from it
0cells of the map it votes in
148citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

148 citing papers in PubMed, 202 citations in OpenAlex.

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88 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 8 institutions in 3 countries.

Robert WuerffelDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL 60612-7344, USA.
Lili Wang
Fernando Grigera
John Manis
Erik Selsing
Thomas Perlot
Frederick W Alt
Michel Cogne
Eric Pinaud
Amy L Kenter
Harvard University · USUniversity of Illinois Chicago · USCentre National de la Recherche Scientifique · FRHoward Hughes Medical Institute · USIllinois College · USTufts University · USUniversité de Limoges · FRUniversity of Illinois Urbana-Champaign · US

Funding

IMMUNITY IN TRANSGENIC MICER01AI024465 · NIAID · TUFTS UNIVERSITY BOSTON · PI SELSING, ERIK · 1987 to 2010
$3.8M
Factors and DNA Motifs Involved in Ig Class SwitchR01AI052400 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2003 to 2012
$3.7M
NCI NIH HHS P01CA092615NIAID NIH HHS AI052400NIAID NIH HHS AI24465NIAID NIH HHS R01 AI024465NIAID NIH HHS R01 AI052400
6 · The paper itself

Abstract

Molecular mechanisms underlying synapsis of activation-induced deaminase (AID)-targeted S regions during class switch recombination (CSR) are poorly understood. By using chromosome conformation capture techniques, we found that in B cells, the Emicro and 3'Ealpha enhancers were in close spatial proximity, forming a unique chromosomal loop configuration. B cell activation led to recruitment of the germline transcript (GLT) promoters to the Emicro:3'Ealpha complex in a cytokine-dependent fashion. This structure facilitated S-S synapsis because Smicro was proximal to Emicro and a downstream S region was corecruited with the targeted GLT promoter to Emicro:3'Ealpha. We propose that GLT promoter association with the Emicro:3'Ealpha complex creates an architectural scaffolding that promotes S-S synapsis during CSR and that these interactions are stabilized by AID. Thus, the S-S synaptosome is formed as a result of the self-organizing transcription system that regulates GLT expression and may serve to guard against spurious chromosomal translocations.

Indexed as

Genes, Immunoglobulin Heavy ChainAICDA (Activation-Induced Cytidine Deaminase)AnimalsCells, CulturedChromosome PairingCytidine DeaminaseFlow CytometryImmunoglobulin Class SwitchingImmunoglobulin Switch RegionLymphocyte ActivationMiceRegulatory Elements, TranscriptionalReverse Transcriptase Polymerase Chain ReactionTranscription, GeneticAICDA (Activation-Induced Cytidine Deaminase)Cytidine Deaminase

Identifiers

PMID17980632
PMCPMC4979535
OpenAlexW2016448166

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.