Evidence map›Paper›PMID 17975703›Full record

ArticleJournal of human genetics2007

The Tol1 element of medaka fish is transposed with only terminal regions and can deliver large DNA fragments into the chromosomes.

Akihiko Koga, Ichizo Higashide, Hiroshi Hori, Yuko Wakamatsu, Yoriko Kyono-Hamaguchi, Satoshi Hamaguchi

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In one paragraph

Article in Journal of human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Transposon tools hopping in vertebrates.Briefings in functional genomics & proteomics · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Akihiko KogaDivision of Biological Science, Graduate School of Science, Nagoya University, Nagoya, 464-8602, Japan. koga@bio.nagoya-u.ac.jp.
Ichizo HigashideDivision of Biological Science, Graduate School of Science, Nagoya University, Nagoya, 464-8602, Japan.
Hiroshi HoriDivision of Biological Science, Graduate School of Science, Nagoya University, Nagoya, 464-8602, Japan.
Yuko WakamatsuBioscience and Biotechnology Center, Nagoya University, Nagoya, 464-8601, Japan.
Yoriko Kyono-HamaguchiDepartment of Environmental Science, Faculty of Science, Niigata University, Niigata, 950-2181, Japan.
Satoshi HamaguchiDepartment of Environmental Science, Faculty of Science, Niigata University, Niigata, 950-2181, Japan.
Nagoya University · JPNiigata University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tol1 is an active DNA-based transposable element residing in the genome of the medaka fish Oryzias latipes. This element belongs to the hAT transposable element family, of which complete copies have relatively long sequences. In addition, we found that Tol1 elements as long as 18 and 20 kb occur in the medaka fish genome. These facts suggest that Tol1 is suitable for carrying large DNA fragments as a gene transfer vector. Focusing on this, we conducted two kinds of manipulations of the element. The first was to eliminate internal regions dispensable for transposition. It was revealed that a Tol1 element consisting of 157-bp left- and 106-bp right-terminal regions could be transposed without a loss of transposition efficiency. Next, we prepared long Tol1 elements by incorporating unrelated DNA fragments into this short Tol1 clone and examined their transposition efficiencies. The transposition frequency decreased as the element size increased. The longest Tol1 element we examined measured 22.1 kb, and its transposition frequency was approximately one fifth that of a 2.1-kb element. However, this frequency was still significantly higher than that of a random integration of DNA into the chromosomes. The element size of 22.1 kb is the longest ever reported for DNA-based elements currently used for mammals. Thus, Tol1 is a superior gene-transfer vector with a large cargo capacity.

Indexed as

DNA Transposable ElementsGene Transfer TechniquesAnimalsChromosomesDNAGenetic VectorsOryziasDNADNA Transposable Elements

Identifiers

PMID17975703
OpenAlexW2045296216

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.