2x genomes--does depth matter?

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

Who cites it

29 citing papers in PubMed.

1. Chromosomics: Bridging the Gap between Genomes and Chromosomes.Genes · 2019
   Review
2. Are Synonymous Sites in Primates and Rodents Functionally Constrained?Journal of molecular evolution · 2016
   Article
3. Evolutionary histories of transposable elements in the genome of the largest living marsupial carnivore, the Tasmanian devil.Molecular biology and evolution · 2015
   Article
4. Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools.Frontiers in genetics · 2015
   Review
5. Sequencing depth and coverage: key considerations in genomic analyses.Nature reviews. Genetics · 2014
   Review
6. Evolutionary history of the PER3 variable number of tandem repeats (VNTR): idiosyncratic aspect of primate molecular circadian clock.PloS one · 2014
   Article
7. Deep whole-genome sequencing of 100 southeast Asian Malays.American journal of human genetics · 2013
   Article
8. Three periods of regulatory innovation during vertebrate evolution.Science (New York, N.Y.) · 2011
   Article
9. Error and error mitigation in low-coverage genome assemblies.PloS one · 2011
   Article
10. Genome-wide detection of gene extinction in early mammalian evolution.Genome biology and evolution · 2011
    Article
11. Novel intron markers to study the phylogeny of closely related mammalian species.BMC evolutionary biology · 2010
    Article
12. Using paired-end sequences to optimise parameters for alignment of sequence reads against related genomes.BMC genomics · 2010
    Article
13. 2x genomes--depth does matter.Genome biology · 2010
    Article
14. Every genome sequence needs a good map.Genome research · 2009
    Article
15. Phylogeny of the Ferungulata (Mammalia: Laurasiatheria) as determined from phylogenomic data.Molecular phylogenetics and evolution · 2009
    Article
16. What can you do with 0.1x genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae).BMC genomics · 2009
    Article
17. A primate subfamily of galectins expressed at the maternal-fetal interface that promote immune cell death.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
18. Identifying novel constrained elements by exploiting biased substitution patterns.Bioinformatics (Oxford, England) · 2009
    Article
19. A flood of microbial genomes-do we need more?PloS one · 2009
    Article
20. Adaptive history of single copy genes highly expressed in the term human placenta.Genomics · 2009
    Article

Corrections and comments

• Comment on
  Initial sequence and comparative analysis of the cat genome.2007

Authors and funding

1 author.

Funding

No grant is acknowledged in the PubMed record.

Abstract

PubMed holds no abstract for this paper.

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