Evidence map›Paper›PMID 17968598›Full record

ArticleJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry2008

Superoxide reduction by Nanoarchaeum equitans neelaredoxin, an enzyme lacking the highly conserved glutamate iron ligand.

João V Rodrigues, Bruno L Victor, Harald Huber, Lígia M Saraiva, Cláudio M Soares, Diane E Cabelli, Miguel Teixeira

Abstract read
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In one paragraph

Article in Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

  1. Superoxide Anion Chemistry-Its Role at the Core of the Innate Immunity.International journal of molecular sciences · 2023
    Review
  2. Superoxide reduction by a superoxide reductase lacking the highly conserved lysine residue.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
    Article
  3. Article
  4. Review
  5. Article
  6. Superoxide reductase from Nanoarchaeum equitans: expression, purification, crystallization and preliminary X-ray crystallographic analysis.Acta crystallographica. Section F, Structural biology and crystallization communications · 2011
    Article
  7. Purification, crystallization and X-ray crystallographic analysis of Archaeoglobus fulgidus neelaredoxin.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010
    Article
  8. Enzymatic activity mastered by altering metal coordination spheres.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

João V RodriguesInstituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Av. da República (EAN), 2781-901, Oeiras, Portugal.
Bruno L Victor
Harald Huber
Lígia M Saraiva
Cláudio M Soares
Diane E Cabelli
Miguel Teixeira
Universidade Nova de Lisboa · PTBrookhaven National Laboratory · USUniversity of Regensburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Superoxide reductases (SORs) are antioxidant enzymes present in many prokaryotes, either anaerobes or microaerophiles, which detoxify superoxide by reducing it to hydrogen peroxide. The reaction mechanism involves the diffusion-limited encounter of superoxide with the reduced iron site and concomitant formation of an Fe(3+)-(hydro)peroxo adduct that, upon protonation, leads to the formation of hydrogen peroxide. By the end of this process, a glutamate residue coordinates the ferric ion, acting as a sixth ligand. Although this residue is able to shuttle protons to the intermediate at low pH, it seems to have a minor relevance to the overall reduction mechanism. Nevertheless, this ligand is conserved in most SORs known thus far, with the notable exception of neelaredoxin from Nanoarchaeum equitans. The protein of this organism was cloned and overexpressed, and its spectroscopic characterization revealed distinct pH-equilibrium properties in comparison with those of glutamate-containing SORs. A three-dimensional model of this protein was generated in an effort to identify structural properties that could explain these distinct features. Pulse radiolysis measurements showed that the efficiency of this enzyme in reducing superoxide is comparable to that of glutamate-containing SORs, thus definitely ruling out the requirement for such a ligand in the reduction mechanism.

Indexed as

Conserved SequenceAmino Acid SequenceBacterial ProteinsElectron Spin Resonance SpectroscopyGlutamic AcidIronIron-Binding ProteinsLigandsModels, MolecularMolecular Sequence DataMutationNanoarchaeotaOxidation-ReductionProtein Structure, SecondarySequence AlignmentSequence Analysis, ProteinBacterial ProteinsGlutamic AcidIronIron-Binding ProteinsLigandsnlr protein, Desulfovibrio gigasSuperoxide DismutaseSuperoxides

Identifiers

PMID17968598
OpenAlexW2081567909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.