Evidence map›Paper›PMID 17965207›Full record

ArticleApplied and environmental microbiology2007

Transcriptomic and phenotypic analyses suggest a network between the transcriptional regulators HrcA and sigmaB in Listeria monocytogenes.

Yuewei Hu, Haley F Oliver, Sarita Raengpradub, M Elizabeth Palmer, Renato H Orsi, Martin Wiedmann, Kathryn J Boor

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Listeria monocytogenes: from a saprophytic to a cytosolic virulent pathogen.World journal of microbiology & biotechnology · 2025
    Review
  2. Exploring the potential ofFrontiers in microbiology · 2025
    Article
  3. Insights into the Orchestration of Gene Transcription Regulators inInternational journal of molecular sciences · 2022
    Review
  4. Article
  5. Frontiers in microbiology · 2022
    Review
  6. Article
  7. Article
  8. Microorganisms · 2021
    Review
  9. Article
  10. The DegU Orphan Response Regulator Contributes to Heat Stress Resistance inFrontiers in cellular and infection microbiology · 2021
    Article
  11. Article
  12. Robust Heat Shock Response inFrontiers in microbiology · 2021
    Article
  13. Microorganisms · 2019
    Article
  14. Review
  15. Article
  16. Transcriptomic Analysis of the Adaptation ofFrontiers in microbiology · 2017
    Article
  17. Frontiers in microbiology · 2017
    Article
  18. Stochastic and Differential Activation of σFrontiers in microbiology · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuewei HuDepartment of Food Science, 413 Stocking Hall, Cornell University, Ithaca, NY 14853, USA.
Haley F Oliver
Sarita Raengpradub
M Elizabeth Palmer
Renato H Orsi
Martin Wiedmann
Kathryn J Boor

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Listeria monocytogenes HrcA and CtsR negatively regulate class I and III stress response genes, respectively, while sigma(B) positively regulates the transcription of class II stress response genes. To define the HrcA regulon and identify interactions between HrcA, CtsR, and sigma(B), we characterized newly generated L. monocytogenes DeltahrcA, DeltactsR DeltahrcA, and DeltahrcA DeltasigB strains, along with previously described DeltasigB, DeltactsR, and DeltactsR DeltasigB strains, using phenotypic assays (i.e., heat resistance, acid resistance, and invasion of human intestinal epithelial cells) and performed whole-genome transcriptome analysis of the DeltahrcA strain. The hrcA and sigB deletions had significant effects on heat resistance. While the hrcA deletion had no significant effect on acid resistance or invasion efficiency in Caco-2 cells, a linear regression model revealed a significant (P = 0.0493) effect of interactions between the hrcA deletion and the ctsR deletion on invasiveness. Microarray-based transcriptome analyses and promoter searches identified (i) 25 HrcA-repressed genes, including two operons (the groESL and dnaK operons, both confirmed as HrcA regulated by quantitative real-time PCR) and one gene directly repressed by HrcA, and (ii) 36 genes that showed lower transcript levels in the DeltahrcA strain and thus appear to be indirectly upregulated by HrcA. A number of genes were found to be coregulated by either HrcA and CtsR (2 genes), HrcA and sigma(B) (31 genes), or all three regulators (5 genes, e.g., gadCB). Combined with previous evidence that sigma(B) appears to directly regulate hrcA transcription, our data suggest that HrcA and sigma(B), as well as CtsR, form a regulatory network that contributes to the transcription of a number of L. monocytogenes genes.

Indexed as

AcidsAnti-Bacterial AgentsBacterial AdhesionBacterial ProteinsCell LineEpithelial CellsGene DeletionGene Expression ProfilingGene Expression Regulation, BacterialHot TemperatureHumansListeria monocytogenesMolecular Sequence DataOligonucleotide Array Sequence AnalysisRegulonSigma FactorAcidsAnti-Bacterial AgentsBacterial ProteinsSigB protein, BacteriaSigma FactorTranscription Factors

Identifiers

PMID17965207
PMCPMC2168140

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.