Evidence map›Paper›PMID 17965194›Full record

ArticleProtein science : a publication of the Protein Society2007

Thiamine diphosphate binds to intermediates in the assembly of adenovirus fiber knob trimers in Escherichia coli.

Ryan Schulz, Yian-Biao Zhang, Chang-Jun Liu, Paul Freimuth

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 87% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ryan SchulzBiology Department, Brookhaven National Laboratory, Upton, New York 11973, USA .
Yian-Biao Zhang
Chang-Jun Liu
Paul Freimuth
Brookhaven National Laboratory · US

Funding

CLONING AND CHARACTERIZATION OF ADENOVIRUS RECEPTORSR01AI036251 · NIAID · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI FREIMUTH, PAUL I · 1996 to 2004
$1.5M
NIAID NIH HHS AI36251NIAID NIH HHS R01 AI036251
6 · The paper itself

Abstract

Assembly of the adenovirus (Ad) homotrimeric fiber protein is nucleated by its C-terminal knob domain, which itself can trimerize when expressed as a recombinant protein fragment. The non-interlocked, globular structure of subunits in the knob trimer implies that trimers assemble from prefolded monomers through a dimer intermediate, but these intermediates have not been observed and the mechanism of assembly therefore remains uncharacterized. Here we report that expression of the Ad serotype 2 (Ad2) knob was toxic for thi- strains of Escherichia coli, which are defective in de novo synthesis of thiamine (vitamin B1). Ad2 knob trimers isolated from a thi+ strain copurified through multiple chromatography steps with a small molecule of mass equivalent to that of thiamine diphosphate (ThDP). Mutant analysis did not implicate any specific site for ThDP binding. Our results suggest that ThDP may associate with assembly intermediates and become trapped in assembled trimers, possibly within one of several large cavities that are partially solvent-accessible or buried completely within the trimer interior.

Indexed as

AdenoviridaeBinding SitesCapsid ProteinsEscherichia coliGenetic VectorsGene Transfer TechniquesMass SpectrometryModels, MolecularProtein Structure, QuaternaryProtein Structure, TertiaryRecombinant ProteinsThiamine PyrophosphateCapsid Proteinshexon capsid protein, AdenovirusRecombinant ProteinsThiamine Pyrophosphate

Identifiers

PMID17965194
PMCPMC2222807
OpenAlexW2118032103

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.