Evidence map›Paper›PMID 17965186›Full record

ArticleProtein science : a publication of the Protein Society2007

Phosphoinositide binding regulates alpha-actinin CH2 domain structure: analysis by hydrogen/deuterium exchange mass spectrometry.

Stephen J Full, Max L Deinzer, P Shing Ho, Jeffrey A Greenwood

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Isoform divergence of the filamin family of proteins.Molecular biology and evolution · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Stephen J FullDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon 97331, USA.
Max L Deinzer
P Shing Ho
Jeffrey A Greenwood
Oregon State University · US

Funding

Reducing Susceptibility to Environmental Stress Throughout the Life SpanP30ES000210 · NIEHS · OREGON STATE UNIVERSITY · PI BECKMAN, JOSEPH S · 1985 to 2015
$21.4M
TOXICOLOGY OF ENVIRONMENTAL HALOCARBONSP01ES000040 · NIEHS · OREGON STATE UNIVERSITY · PI BECKMAN, JOSEPH S · 1985 to 2007
$8.0M
Phosphoinositide Regulation of Focal Adhesion StructureR01GM063711 · NIGMS · OREGON STATE UNIVERSITY · PI GREENWOOD, JEFFREY A · 2002 to 2006
$1.1M
Structure and stability of Holliday junctionsR01GM062957 · NIGMS · OREGON STATE UNIVERSITY · PI HO, PUI S · 2002 to 2005
$942k
NIEHS NIH HHS ES00040NIEHS NIH HHS ES00210NIEHS NIH HHS P01 ES000040NIEHS NIH HHS P30 ES000210NIGMS NIH HHS GM63711NIGMS NIH HHS R01 GM062957NIGMS NIH HHS R01 GM063711NIGMS NIH HHS R1GM62957A
6 · The paper itself

Abstract

alpha-Actinin is an actin bundling protein that regulates cell adhesion by directly linking actin filaments to integrin adhesion receptors. Phosphatidylinositol (4,5)-diphosphate (PtdIns (4,5)-P(2)) and phosphatidylinositol (3,4,5)-triphosphate (PtdIns (3,4,5)-P(3)) bind to the calponin homology 2 domain of alpha-actinin, regulating its interactions with actin filaments and integrin receptors. In this study, we examine the mechanism by which phosphoinositide binding regulates alpha-actinin function using mass spectrometry to monitor hydrogen-deuterium (H/D) exchange within the calponin homology 2 domain. The overall level of H/D exchange for the entire protein showed that PtdIns (3,4,5)-P(3) binding alters the structure of the calponin homology 2 domain increasing deuterium incorporation, whereas PtdIns (4,5)-P(2) induces changes in the structure decreasing deuterium incorporation. Analysis of peptic fragments from the calponin homology 2 domain showed decreased local H/D exchange within the loop region preceding helix F with both phosphoinositides. However, the binding of PtdIns (3,4,5)-P(3) also induced increased exchange within helix E. This suggests that the phosphate groups on the fourth and fifth position of the inositol head group of the phosphoinositides constrict the calponin homology 2 domain, thereby altering the orientation of actin binding sequence 3 and decreasing the affinity of alpha-actinin for filamentous actin. In contrast, the phosphate group on the third position of the inositol head group of PtdIns (3,4,5)-P(3) perturbs the calponin homology 2 domain, altering the interaction between the N and C terminus of the full-length alpha-actinin antiparallel homodimer, thereby disrupting bundling activity and interaction with integrin receptors.

Indexed as

Actin CytoskeletonActininDeuteriumHumansHydrogenIntegrinsMass SpectrometryModels, MolecularPhosphatidylinositol 4,5-DiphosphateProtein Structure, SecondaryProtein Structure, TertiaryActininDeuteriumHydrogenIntegrinsPhosphatidylinositol 4,5-Diphosphate

Identifiers

PMID17965186
PMCPMC2190733
OpenAlexW2165504257

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.