Evidence map›Paper›PMID 17962383›Full record

ArticleMolecular endocrinology (Baltimore, Md.)2008

Transcriptome profiling of estrogen-regulated genes in human primary osteoblasts reveals an osteoblast-specific regulation of the insulin-like growth factor binding protein 4 gene.

Stefanie Denger, Tomi Bähr-Ivacevic, Heike Brand, George Reid, Jonathon Blake, Martin Seifert, Chin-Yo Lin, Klaus May, Vladimir Benes, Edison T Liu and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular endocrinology (Baltimore, Md.), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Vitamin DScientific reports · 2024
    Article
  2. Article
  3. Article
  4. Role of IGF1 and EFN-EPH signaling in skeletal metabolism.Journal of molecular endocrinology · 2018
    Review
  5. Review
  6. Review
  7. Article
  8. Sex steroid actions in male bone.Endocrine reviews · 2014
    Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Stefanie DengerEuropean Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. denger@embl.de
Tomi Bähr-Ivacevic
Heike Brand
George Reid
Jonathon Blake
Martin Seifert
Chin-Yo Lin
Klaus May
Vladimir Benes
Edison T Liu
Frank Gannon
European Molecular Biology Laboratory · DEBrigham Young University · USGenome Institute of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Estradiol (E2) is believed to modulate physiological functions relevant to osteoblast biology through the actions of estrogen receptors (ERs) that in turn regulate the expression of target genes. The molecular effects of estrogen action in bone remain to be fully elucidated. This study reports a genome-wide molecular and computational analysis of the interaction between ER and regulatory elements on the DNA of target genes in human primary osteoblasts. Of approximately 54,000 gene probes surveyed in this study, a total of 375 genes were up-regulated and 418 genes were down-regulated on exposure to E2, with only 46 of these being direct target genes after 24 h, as determined by concomitant cycloheximide treatment. Computational analysis discovered several pathways where E2 co-regulates multiple functionally linked components. Examination of the genomic sequence of IGF binding protein 4 located ER response elements within the first intron. Using by chromatin immunoprecipitation, we show a site- and cell-specific recruitment of transcription factors to this newly identified regulatory region. Transient transfection studies revealed that this intronic region acts as a functional promoter in human osteoblasts. Taken together, this analysis provides a comprehensive gene transcription profile and identifies several genes of potential physiological importance in controlling estrogen-mediated signaling in primary osteoblasts.

Indexed as

Binding SitesCells, CulturedChromatin ImmunoprecipitationCycloheximideEstradiolEstrogensGene Expression ProfilingGene Expression RegulationHumansInsulin-Like Growth Factor Binding Protein 4IntronsModels, BiologicalOligonucleotide Array Sequence AnalysisOsteoblastsPromoter Regions, GeneticReverse Transcriptase Polymerase Chain ReactionCycloheximideEstradiolEstrogensInsulin-Like Growth Factor Binding Protein 4

Identifiers

PMID17962383
PMCPMC5419644
OpenAlexW2069245164

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.