Evidence map›Paper›PMID 17962040›Full record

ArticleJournal of structural biology2008

The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications.

Gina E Sosinsky, John Crum, Ying Z Jones, Jason Lanman, Benjamin Smarr, Masako Terada, Maryann E Martone, Thomas J Deerinck, John E Johnson, Mark H Ellisman

Abstract read
In one paragraph

Article in Journal of structural biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed.

  1. Structural and Functional Characterization of EXPO-Derived Extracellular Vesicles in Plants.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  5. Review
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  12. Rehydration of Freeze Substituted Brain Tissue for Pre-embedding Immunoelectron Microscopy.Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada · 2023
    Article
  13. Article
  14. Review
  15. Article
  16. Morphological principles of neuronal mitochondria.The Journal of comparative neurology · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Gina E SosinskyNational Center for Microscopy and Imaging Research, Department of Neurosciences, University of California, San Diego, 1070 Basic Science Building MC 0608, 9500 Gilman Drive, La Jolla, CA 92093-0608, USA. gsosinsky@ucsd.edu
John Crum
Ying Z Jones
Jason Lanman
Benjamin Smarr
Masako Terada
Maryann E Martone
Thomas J Deerinck
John E Johnson
Mark H Ellisman

Funding

VOLUMETRIC CONTOUR-BASED SURFACE RECONSTRUCTIONP41RR004050 · NCRR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PASQUALE, ELENA B · 1989 to 2011
$28.0M
High Resolution of Structural Studies of Insect VirusesR37GM034220 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI JOHNSON, JOHN EMIL · 2002 to 2011
$4.7M
STRUCTURE AND DYNAMICS OF CONNEXIN26 GAP JUNCTIONSR01GM065937 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PERKINS, GUY A · 2003 to 2016
$3.9M
DEVELOPMENT OF A 3-D CELL-CENTERED NEURONAL DATABASER01DA016602 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MARTONE, MARYANN E · 2003 to 2007
$3.4M
STRUCTURAL ANALYSIS OF GAP JUNCTION TRAFFICKINGR01GM072881 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PERKINS, GUY A · 2005 to 2015
$2.6M
DYNAMICS OF MEMBRANE ORGANIZATION AT NODES OF RANVIERR01NS014718 · NINDS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI ELLISMAN, MARK H · 1986 to 2005
$1.4M
X-RAY DIFFRACTION STUDIES OF T=3 ISOMETRIC INSECT VIRUSR01GM034220 · NIGMS · SCRIPPS RESEARCH INSTITUTE · PI JOHNSON, JOHN · 1985 to 2001
$749k
A HIGH PRESSURE FREEZER FOR ELECTRON MICROSCOPY USESS10RR016699 · NCRR · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI SOSINSKY, GINA ELLEN · 2002 to 2002
$192k
NCRR NIH HHS P41 RR004050NCRR NIH HHS RR004050NCRR NIH HHS S10 RR016699NIDA NIH HHS DA016602NIDA NIH HHS R01 DA016602NIGMS NIH HHS GM065937NIGMS NIH HHS GM072881NIGMS NIH HHS GM34220NIGMS NIH HHS R01 GM034220NIGMS NIH HHS R01 GM065937NIGMS NIH HHS R01 GM072881NIGMS NIH HHS R37 GM034220NINDS NIH HHS NS14718NINDS NIH HHS R01 NS014718
6 · The paper itself

Abstract

The emergence of electron tomography as a tool for three dimensional structure determination of cells and tissues has brought its own challenges for the preparation of thick sections. High pressure freezing in combination with freeze substitution provides the best method for obtaining the largest volume of well-preserved tissue. However, for deeply embedded, heterogeneous, labile tissues needing careful dissection, such as brain, the damage due to anoxia and excision before cryofixation is significant. We previously demonstrated that chemical fixation prior to high pressure freezing preserves fragile tissues and produces superior tomographic reconstructions compared to equivalent tissue preserved by chemical fixation alone. Here, we provide further characterization of the technique, comparing the ultrastructure of Flock House Virus infected DL1 insect cells that were (1) high pressure frozen without fixation, (2) high pressure frozen following fixation, and (3) conventionally prepared with aldehyde fixatives. Aldehyde fixation prior to freezing produces ultrastructural preservation superior to that obtained through chemical fixation alone that is close to that obtained when cells are fast frozen without fixation. We demonstrate using a variety of nervous system tissues, including neurons that were injected with a fluorescent dye and then photooxidized, that this technique provides excellent preservation compared to chemical fixation alone and can be extended to selectively stained material where cryofixation is impractical.

Indexed as

AnimalsCryopreservationDrosophilaNeuronsPressureTissue FixationTomographyVirus Internalization

Identifiers

PMID17962040
PMCPMC2459253

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.