Evidence map›Paper›PMID 17961212›Full record

ArticleBMC evolutionary biology2007

Dicyema Pax6 and Zic: tool-kit genes in a highly simplified bilaterian.

Jun Aruga, Yuri S Odaka, Akiko Kamiya, Hidetaka Furuya

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  3. International journal of molecular sciences · 2019
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  12. Constrained intron structures in a microsporidian.Molecular biology and evolution · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jun ArugaLaboratory for Comparative Neurogenesis, RIKEN Brain Science Institute, Wako 351-0198, Japan. jaruga@brain.riken.jp
Yuri S Odaka
Akiko Kamiya
Hidetaka Furuya
RIKEN Center for Brain Science · JPOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDicyemid mesozoans (Phylum Dicyemida) are simple (8-40-cell) cephalopod endoparasites. They have neither body cavities nor differentiated organs, such as nervous and gastrointestinal systems. Whether dicyemids are intermediate between Protozoa and Metazoa (as represented by their "Mesozoa" classification) or degenerate species of more complex metazoans is controversial. Recent molecular phylogenetic studies suggested that they are simplified bilaterians belonging to the Lophotrochozoa. We cloned two genes developmentally critical in bilaterian animals (Pax6 and Zic), together with housekeeping genes (actin, fructose-bisphosphate aldolase, and ATP synthase beta subunit) from a dicyemid to reveal whether their molecular phylogeny supported the "simplification" hypothesis, and to clarify evolutionary changes in dicyemid gene structure and expression profiles.

resultsGenomic/cDNA sequence analysis showed that 1) the Pax6 molecular phylogeny and Zic intron positions supported the idea of dicyemids as reduced bilaterians; 2) the aa sequences deduced from the five genes were highly divergent; and 3) Dicyema genes contained very short introns of uniform length. In situ hybridization analyses revealed that Zic genes were expressed in hermaphroditic gonads, and Pax6 was expressed weakly throughout the developmental stages of the 2 types of embryo and in the hermaphroditic gonads.

conclusionThe accelerated evolutionary rates and very short and uniform intron may represent a part of Dicyema genomic features. The presence and expression of the two tool-kit genes (Pax6 and Zic) in Dicyema suggests that they can be very versatile genes even required for the highly reduced bilaterian like Dicyema. Dicyemids may be useful models of evolutionary body plan simplification.

Indexed as

ActinsAmino Acid SequenceAnimalsBase SequenceDNA, ComplementaryEvolution, MolecularEye ProteinsGene Expression Regulation, DevelopmentalGenetic VariationHomeodomain ProteinsIn Situ HybridizationInvertebratesPaired Box Transcription FactorsPAX6 Transcription FactorPhylogenyRepressor ProteinsActinsDNA, ComplementaryEye ProteinsHomeodomain ProteinsPaired Box Transcription FactorsPAX6 Transcription FactorRepressor ProteinsRNA, Ribosomal, 18STranscription Factors

Identifiers

PMID17961212
PMCPMC2222250
OpenAlexW2027524506

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.