Evidence map›Paper›PMID 17959926›Full record

ArticleRNA (New York, N.Y.)2007

The RNA binding protein RNPS1 alleviates ASF/SF2 depletion-induced genomic instability.

Xialu Li, Tianhui Niu, James L Manley

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. RNPS1 inhibits excessive tumor necrosis factor/tumor necrosis factor receptor signaling to support hematopoiesis in mice.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Genome instability is a consequence of transcription deficiency in patients with bone marrow failure harboring biallelicProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Review
  15. Article
  16. R Loops and Links to Human Disease.Journal of molecular biology · 2017
    Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Xialu LiDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Tianhui Niu
James L Manley
National Institute of Biological Sciences, Beijing · CNColumbia University · US

Funding

MECHANISMS OF ALTERNATIVE SPLICING OF PRE MRNAR37GM048259 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MANLEY, JAMES L. · 1996 to 2005
$2.8M
NIGMS NIH HHS R37 GM048259NIGMS NIH HHS R37 GM 48259
6 · The paper itself

Abstract

Formation of transcription-induced R-loops poses a critical threat to genomic integrity throughout evolution. We have recently shown that the SR protein ASF/SF2 prevents R-loop formation in vertebrates by cotranscriptionally binding to nascent mRNA precursors to prevent their reassociation with template DNA. Here, we identify another RNA binding protein, RNPS1, that when overexpressed strongly suppresses the high molecular weight (HMW) DNA fragmentation, hypermutation, and G2 cell cycle arrest phenotypes of ASF/SF2-depleted cells. Furthermore, ablation of RNPS1 by RNA interference in HeLa cells leads to accumulation of HMW DNA fragments. As ASF/SF2 depletion does not influence RNPS1 expression, and RNPS1 cannot compensate for ASF/SF2 function in splicing, our data suggest that RNPS1 is able to function together with ASF/SF2 to form RNP complexes on nascent transcripts, and thereby prevent formation of transcriptional R-loops.

Indexed as

DNA DamageDNA FragmentationGenomic InstabilityCell DeathCell LineDNA, ComplementaryG2 PhaseGene Expression RegulationHumansNuclear ProteinsRibonucleoproteinsRNA-Binding ProteinsSerine-Arginine Splicing FactorsTranscription, GeneticDNA, ComplementaryNuclear ProteinsRibonucleoproteinsRNA-Binding ProteinsRNPS1 protein, humanSerine-Arginine Splicing Factors

Identifiers

PMID17959926
PMCPMC2080599
OpenAlexW2168144611

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.