Evidence map›Paper›PMID 17959660›Full record

ArticleJournal of virology2008

Removal of a single N-linked glycan in human immunodeficiency virus type 1 gp120 results in an enhanced ability to induce neutralizing antibody responses.

Yun Li, Bradley Cleveland, Igor Klots, Bruce Travis, Barbra A Richardson, David Anderson, David Montefiori, Patricia Polacino, Shiu-Lok Hu

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers.

0numbers the graph read from it
0cells of the map it votes in
116citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

116 citing papers in PubMed, 165 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Review
  6. Central tolerance shapes the neutralizing B cell repertoire against a persisting virus in its natural host.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Impact of Protein Glycosylation on the Design of Viral Vaccines.Advances in biochemical engineering/biotechnology · 2021
    Review
  16. Review
  17. Article
  18. Article
  19. Specific Substitutions in Region V2 of gp120Pathogens (Basel, Switzerland) · 2020
    Article
  20. Article

56 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yun LiWashington National Primate Center, University of Washington, 3000 Western Ave., Seattle, WA 98121, USA.
Bradley Cleveland
Igor Klots
Bruce Travis
Barbra A Richardson
David Anderson
David Montefiori
Patricia Polacino
Shiu-Lok Hu
Oregon National Primate Research Center · USDuke Medical Center · USUniversity of Washington · US

Funding

Combined Approach to Broadly Protective AIDS VaccinesP01AI054564 · NIAID · UNIVERSITY OF WASHINGTON · PI HU, SHIU-LOK · 2003 to 2007
$15.1M
ROLES OF N-LINKED GLYCANS AND IMMUNOGENICITY OF HIV1R21AI042720 · NIAID · UNIVERSITY OF WASHINGTON · PI HU, SHIU-LOK · 1997 to 1997
–
NIAID NIH HHS P01 AI 054564NIAID NIH HHS P01 AI054564NIAID NIH HHS R21 AI 042720
6 · The paper itself

Abstract

Glycans on human immunodeficiency virus (HIV) envelope protein play an important role in infection and evasion from host immune responses. To examine the role of specific glycans, we introduced single or multiple mutations into potential N-linked glycosylation sites in hypervariable regions (V1 to V3) of the env gene of HIV type 1 (HIV-1) 89.6. Three mutants tested showed enhanced sensitivity to soluble CD4. Mutant N7 (N197Q) in the carboxy-terminal stem of the V2 loop showed the most pronounced increase in sensitivity to broadly neutralizing antibodies (NtAbs), including those targeting the CD4-binding site (IgG1b12) and the V3 loop (447-52D). This mutant is also sensitive to CD4-induced NtAb 17b in the absence of CD4. Unlike the wild-type (WT) Env, mutant N7 mediates CD4-independent infection in U87-CXCR4 cells. To study the immunogenicity of mutant Env, we immunized pig-tailed macaques with recombinant vaccinia viruses, one expressing SIVmac239 Gag-Pol and the other expressing HIV-1 89.6 Env gp160 in WT or mutant forms. Animals were boosted 14 to 16 months later with simian immunodeficiency virus gag DNA and the cognate gp140 protein before intrarectal challenge with SHIV89.6P-MN. Day-of-challenge sera from animals immunized with mutant N7 Env had significantly higher and broader neutralizing activities than sera from WT Env-immunized animals. Neutralizing activity was observed against SHIV89.6, SHIV89.6P-MN, HIV-1 SF162, and a panel of subtype B primary isolates. Compared to control animals, immunized animals showed significant reduction of plasma viral load and increased survival after challenge, which correlated with prechallenge NtAb titers. These results indicate the potential advantages for glycan modification in vaccine design, although the role of specific glycans requires further examination.

Indexed as

AIDS VaccinesAmino Acid SubstitutionAnimalsAntibodies, ViralGenetic VectorsHIV-1HIV Envelope Protein gp120Immunization, SecondaryMacaca nemestrinaMutant ProteinsNeutralization TestsPolysaccharidesSimian Acquired Immunodeficiency SyndromeSurvival AnalysisVaccines, SyntheticVaccinia virusAIDS VaccinesAntibodies, ViralHIV Envelope Protein gp120Mutant ProteinsPolysaccharidesVaccines, Synthetic

Identifiers

PMID17959660
PMCPMC2224603
OpenAlexW2134123088

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.