Evidence map›Paper›PMID 17953759›Full record

ArticleBMC medical informatics and decision making2007

Is OpenSDE an alternative for dedicated medical research databases? An example in coronary surgery.

Angeliek C Venema, Astrid M van Ginneken, Marcel de Wilde, Ad J J C Bogers

Abstract read
In one paragraph

Article in BMC medical informatics and decision making, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Angeliek C VenemaDept. of Cardio-Thoracic Surgery, Erasmus MC, Rotterdam, The Netherlands. a.c.venema@erasmusmc.nl
Astrid M van Ginneken
Marcel de Wilde
Ad J J C Bogers

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWhen using a conventional relational database approach to collect and query data in the context of specific clinical studies, a study with a new data set usually requires the design of a new database and entry forms. OpenSDE (SDE = Structured Data Entry) is intended to provide a flexible and intuitive way to create databases and entry forms for the collection of data in a structured format. This study illustrates the use of OpenSDE as a potential alternative to a conventional approach with respect to data modelling, database creation, data entry, and data extraction.

methodsA database and entry forms are created using OpenSDE and MSAccess to support collection of coronary surgery data, based on the Adult Cardiac Surgery Data Set of the Society of Thoracic Surgeons. Data of 52 cases are entered and nine different queries are designed, and executed on both databases.

resultsDesign of the data model and the creation of entry forms were experienced as more intuitive and less labor intensive with OpenSDE. Both resulting databases provided sufficient expressiveness to accommodate the data set. Data entry was more flexible with OpenSDE. Queries produced equal and correct results with comparable effort.

conclusionFor prospective studies involving well-defined and straight forward data sets, OpenSDE deserves to be considered as an alternative to the conventional approach.

Indexed as

Biomedical ResearchDatabase Management SystemsDatabases, FactualThoracic Surgical ProceduresAdultCoronary DiseaseData DisplayHumansInformation Storage and RetrievalMedical Informatics ApplicationsResearch DesignUser-Computer Interface

Identifiers

PMID17953759
PMCPMC2173886

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.