Evidence map›Paper›PMID 17953490›Full record

ArticlePLoS genetics2007

The cdx genes and retinoic acid control the positioning and segmentation of the zebrafish pronephros.

Rebecca A Wingert, Rori Selleck, Jing Yu, Huai-Dong Song, Zhu Chen, Anhua Song, Yi Zhou, Bernard Thisse, Christine Thisse, Andrew P McMahon and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 205 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
205citing papers in PubMed, 2 pooled it
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

205 citing papers in PubMed, 2 syntheses or guidelines pooled it, 335 citations in OpenAlex.

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145 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Rebecca A WingertCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts, USA.
Rori Selleck
Jing Yu
Huai-Dong Song
Zhu Chen
Anhua Song
Yi Zhou
Bernard Thisse
Christine Thisse
Andrew P McMahon
Alan J Davidson
Massachusetts General Hospital · USHarvard University · USInstitut de génétique et de biologie moléculaire et cellulaire · FRShanghai Institute of Hematology · CNBoston Children's Hospital · USDana-Farber Cancer Institute · US

Funding

CELL INTERACTIONS IN DEVELOPMENT OF THE MAMMALIAN KIDNEYR01DK054364 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MCMAHON, ANDREW P. · 1998 to 2022
$6.9M
Kidney molecular atlas projectU01DK070181 · NIDDK · HARVARD UNIVERSITY · PI MCMAHON, ANDREW P. · 2004 to 2010
$5.9M
EXPRESSION OF THE ZEBRAFISH GENOME DURING EMBRYOGENESISR01RR015402 · NCRR · LAB DE GENETIQUE MOLECULAIRE DES EUCARYO · PI THISSE, BERNARD V · 2001 to 2006
$1.9M
NCRR NIH HHS R01 RR015402NCRR NIH HHS R01RR15402NIDDK NIH HHS R01 DK054364NIDDK NIH HHS U01 DK070181
6 · The paper itself

Abstract

Kidney function depends on the nephron, which comprises a blood filter, a tubule that is subdivided into functionally distinct segments, and a collecting duct. How these regions arise during development is poorly understood. The zebrafish pronephros consists of two linear nephrons that develop from the intermediate mesoderm along the length of the trunk. Here we show that, contrary to current dogma, these nephrons possess multiple proximal and distal tubule domains that resemble the organization of the mammalian nephron. We examined whether pronephric segmentation is mediated by retinoic acid (RA) and the caudal (cdx) transcription factors, which are known regulators of segmental identity during development. Inhibition of RA signaling resulted in a loss of the proximal segments and an expansion of the distal segments, while exogenous RA treatment induced proximal segment fates at the expense of distal fates. Loss of cdx function caused abrogation of distal segments, a posterior shift in the position of the pronephros, and alterations in the expression boundaries of raldh2 and cyp26a1, which encode enzymes that synthesize and degrade RA, respectively. These results suggest that the cdx genes act to localize the activity of RA along the axis, thereby determining where the pronephros forms. Consistent with this, the pronephric-positioning defect and the loss of distal tubule fate were rescued in embryos doubly-deficient for cdx and RA. These findings reveal a novel link between the RA and cdx pathways and provide a model for how pronephric nephrons are segmented and positioned along the embryonic axis.

Indexed as

Gene Expression RegulationGene Expression Regulation, DevelopmentalAnimalsCloning, MolecularHomeodomain ProteinsIn Situ HybridizationKidneyMiceModels, BiologicalMutationPhenotypeProtein Structure, TertiaryTranscription FactorsTretinoinZebrafishHomeodomain ProteinsTranscription FactorsTretinoin

Identifiers

PMID17953490
PMCPMC2042002
OpenAlexW2152976830

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.