Evidence map›Paper›PMID 17951523›Full record

ArticleEukaryotic cell2008

Mat formation in Saccharomyces cerevisiae requires nutrient and pH gradients.

Todd B Reynolds, An Jansen, Xin Peng, Gerald R Fink

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 62 citations in OpenAlex.

  1. The role ofmBio · 2026
    Article
  2. Article
  3. Article
  4. KtrB-mediated alkaline adaptation drivesFrontiers in microbiology · 2025
    Article
  5. Article
  6. Article
  7. Review
  8. The Flo Adhesin Family.Pathogens (Basel, Switzerland) · 2021
    Review
  9. Article
  10. Review
  11. Adhesins of Yeasts: Protein Structure and Interactions.Journal of fungi (Basel, Switzerland) · 2018
    Review
  12. Article
  13. Nutrient depletion modifies cell wall adsorption activity of wine yeast.World journal of microbiology & biotechnology · 2016
    Article
  14. Article
  15. Biofilm/Mat assays for budding yeast.Cold Spring Harbor protocols · 2015
    Article
  16. Article
  17. Article
  18. Article
  19. RACK1/Asc1p, a ribosomal node in cellular signaling.Molecular & cellular proteomics : MCP · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Todd B ReynoldsDepartment of Microbiology, University of Tennessee, F321 Walters Life Sciences Bldg., Knoxville, TN 37996, USA. treynol6@utk.edu
An Jansen
Xin Peng
Gerald R Fink
University of Tennessee at Knoxville · USWhitehead Institute for Biomedical Research · US

Funding

REGULATION OF HISTIDINE BIOSYNTHESIS IN YEASTR01GM035010 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI FINK, GERALD R · 1985 to 2016
$9.9M
The Role of Genetic Variation in the Fungal/Host InteractionR01GM040266 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI FINK, GERALD R · 1988 to 2012
$8.6M
CONTROL OF GENOME SIZEF32GM020565 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI REYNOLDS, TODD B · 2000 to 2002
$119k
REGULATION OF HISTIDINE BIOSYNTHESIS IN YEASTR37GM035010 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI FINK, GERALD R · 1986 to 1995
–
NIGMS NIH HHS F32 GM020565NIGMS NIH HHS F32GM020565NIGMS NIH HHS GM35010NIGMS NIH HHS GM40266NIGMS NIH HHS R01 GM035010NIGMS NIH HHS R01 GM040266
6 · The paper itself

Abstract

The ability of Saccharomyces cerevisiae to form morphologically complex colony-like structures called mats requires expression of the cell surface glycoprotein Flo11p and growth on a semisolid surface. As the mat grows, it forms two visually distinct populations called the rim (edge of the mat) and the hub (interior of the mat), which can be physically separated from one another based on their agar adherence properties. Here, we show that growth of the mat on a semisolid agar surface creates concentric glucose and pH gradients in the medium that are required for the differentiation of the hub and rim. Disruption of the pathways that respond to changing levels of glucose block mat formation by decreasing FLO11 expression. However, in wild-type cells, Flo11p is expressed in both portions of the structure. The difference in adherence between the rim and hub appears to be a consequence of the reduced adherence of Flo11p at the elevated pH of the rim.

Indexed as

Proton-Motive ForceBlotting, NorthernCell AdhesionFluorescent Antibody TechniqueGene Expression Regulation, FungalGlucoseLigasesMembrane GlycoproteinsMembrane ProteinsReverse Transcriptase Polymerase Chain ReactionRNA, FungalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsFLO11 protein, S cerevisiaeGlucoseHUB1 protein, S cerevisiaeLigasesMembrane GlycoproteinsMembrane ProteinsRNA, FungalSaccharomyces cerevisiae Proteins

Identifiers

PMID17951523
PMCPMC2224160
OpenAlexW2166962289

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.