Evidence map›Paper›PMID 17943463›Full record

ReviewMolecular biotechnology2008

An overview of epigenetic assays.

J Tyson DeAngelis, Woodrow J Farrington, Trygve O Tollefsbol

Abstract readReview
In one paragraph

Review in Molecular biotechnology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. The Role of M6A LncRNA Modification in Papillary Thyroid Cancer.International journal of molecular sciences · 2025
    Review
  4. Article
  5. Article
  6. ReducedInternational journal of molecular sciences · 2021
    Article
  7. The Zebrafish Model to Understand Epigenetics in Renal Diseases.International journal of molecular sciences · 2021
    Review
  8. A Comparative Overview of Epigenomic Profiling Methods.Frontiers in cell and developmental biology · 2021
    Review
  9. Article
  10. Review
  11. Genomics of Particulate Matter Exposure Associated Cardiopulmonary Disease: A Narrative Review.International journal of environmental research and public health · 2019
    Review
  12. Review
  13. Article
  14. Article
  15. DNA methylation in inflammatory genes among children with obstructive sleep apnea.American journal of respiratory and critical care medicine · 2012
    Article
  16. Article
  17. Nitric oxide: perspectives and emerging studies of a well known cytotoxin.International journal of molecular sciences · 2010
    Review
  18. Review
  19. Chromosome-wide analysis of protein binding and modifications.Methods in molecular biology (Clifton, N.J.) · 2009
    Article
  20. Interindividual variation in epigenomic phenomena in humans.Mammalian genome : official journal of the International Mammalian Genome Society
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

J Tyson DeAngelisDepartment of Biology, University of Alabama at Birmingham, Birmingham, AL 35294-1170, USA.
Woodrow J Farrington
Trygve O Tollefsbol

Funding

Epigenetics of Dietary EGCG in Cancer PreventionR21CA114019 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI TOLLEFSBOL, TRYGVE O · 2006 to 2007
$296k
NCI NIH HHS R21 CA114019
6 · The paper itself

Abstract

A significant portion of ongoing epigenetic research involves the investigation of DNA methylation and chromatin modification patterns seen throughout many biological processes. Over the last few years, epigenetic research has undergone a gradual shift and recent studies have been directed toward a genome-wide assessment. DNA methylation and chromatin modifications are essential components of the regulation of gene activity. DNA methylation effectively down-regulates gene activity by addition of a methyl group to the five-carbon of a cytosine base. Less specifically, modification of the chromatin structure can be carried out by multiple mechanisms leading to either the upregulation or down-regulation of the associated gene. Of the many assays used to assess the effects of epigenetic modifications, chromatin immunoprecipitation (ChIP), which serves to monitor changes in chromatin structure, and bisulfite modification, which tracks changes in DNA methylation, are the two most commonly used techniques.

Indexed as

Genetic TechniquesAnimalsChromatin Assembly and DisassemblyChromatin ImmunoprecipitationDNA MethylationEnzymesEpigenesis, GeneticHumansEnzymes

Identifiers

PMID17943463
PMCPMC2423347

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.