Evidence map›Paper›PMID 17942744›Full record

ArticleRNA (New York, N.Y.)2007

MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T.

M Bryan Warf, J Andrew Berglund

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 128 papers.

0numbers the graph read from it
0cells of the map it votes in
128citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

128 citing papers in PubMed, 177 citations in OpenAlex.

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68 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

M Bryan WarfDepartment of Chemistry, University of Oregon, Eugene, Oregon 97403, USA.
J Andrew Berglund
University of Oregon · US

Funding

STRUCTURE AND RELATIONS OF PROTEINS AND NUCLEIC ACIDSR01GM015792 · NIGMS · UNIVERSITY OF OREGON · PI MARCUS, ANDREW HADLEY · 1985 to 2025
$10.2M
MOLECULAR BIOLOGY AND BIOPHYSICST32GM007759 · NIGMS · UNIVERSITY OF OREGON · PI NOLEN, BRADLEY J · 1985 to 2021
$8.5M
Molecular Mechanisms of Myotonic DystrophyR01AR053903 · NIAMS · UNIVERSITY OF OREGON · PI BERGLUND, ANDREW · 2006 to 2010
$1.3M
STRUCTURE &RELATIONS OF PROTEINS &NUCLEIC ACIDSR37GM015792 · NIGMS · UNIVERSITY OF OREGON · PI VON HIPPEL, PETER HANS · 1988 to 1997
–
NIAMS NIH HHS AR053903NIAMS NIH HHS R01 AR053903NIGMS NIH HHS GM-07759NIGMS NIH HHS GM-15792NIGMS NIH HHS R01 GM015792NIGMS NIH HHS T32 GM007759
6 · The paper itself

Abstract

Myotonic dystrophy (DM) is a genetic disorder with multisystemic symptoms that is caused by expression (as RNA) of expanded repeats of CTG or CCTG in the genome. It is hypothesized that the RNA splicing factor muscleblind-like (MBNL) is sequestered to the expanded CUG or CCUG RNAs. Mislocalization of MBNL results in missplicing of a subset of pre-mRNAs that are linked to the symptoms found in DM patients. We demonstrate that MBNL can bind short structured CUG and CCUG repeats with high affinity and specificity. Only 6 base pairs are necessary for MBNL binding: two pyrimidine mismatches and four guanosine-cytosine base pairs in a stem. MBNL also has a preference for pyrimidine mismatches, but many other mismatches are tolerated with decreased affinity. We also demonstrate that MBNL binds the helical region of a stem-loop in the endogenous pre-mRNA target, the cardiac troponin T (cTNT) pre-mRNA. The stem-loop contains two mismatches and resembles both CUG and CCUG repeats. In vivo splicing results indicate that MBNL-regulated splicing is dependent upon the formation of stem-loops recognized by MBNL. These results suggest that MBNL may bind all of its RNA substrates, both normal and pathogenic, as structured stem-loops containing pyrimidine mismatches.

Indexed as

Trinucleotide Repeat ExpansionBase PairingBase Pair MismatchBase SequenceGenetic CodeHumansIntronsKineticsMolecular Sequence DataMyocardiumMyotonic DystrophyRNARNA-Binding ProteinsRNA, MessengerRNA PrecursorsTroponin TMBNL1 protein, humanRNARNA-Binding ProteinsRNA, MessengerRNA PrecursorsTroponin T

Identifiers

PMID17942744
PMCPMC2080590
OpenAlexW1869970222

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.