Evidence map›Paper›PMID 17942694›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability.

Derek N Fuller, Dorian M Raymer, Vishal I Kottadiel, Venigalla B Rao, Douglas E Smith

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 197 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Viral Genomic DNA Packaging Machinery.Sub-cellular biochemistry · 2024
    Review
  11. Optical Tweezers to Study Viruses.Sub-cellular biochemistry · 2024
    Review
  12. Article
  13. Review
  14. Terminase Subunits from the Pseudomonas-Phage E217.Journal of molecular biology · 2022
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Derek N FullerDepartment of Physics, University of California at San Diego, La Jolla, CA 92093, USA.
Dorian M Raymer
Vishal I Kottadiel
Venigalla B Rao
Douglas E Smith
University of California, San Diego · USCatholic University of America · USUniversity of America · US

Funding

MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008326 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOMIVES, ELIZABETH A. · 1989 to 2020
$7.5M
Structural studies of bacteriophage T4 and their potential medical applicationsR01AI081726 · NIAID · PURDUE UNIVERSITY · PI KUHN, RICHARD J., RAO, VENIGALLA B. · 2010 to 2019
$6.2M
Phase T4 Head Assembly and Initiation of InfectionR01AI011676 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI BLACK, LINDSAY W · 1985 to 2013
$4.1M
Mechanisms of Viral DNA Packaging: Biophysical, Biochemical, & Genetic AnalysisR01GM088186 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CATALANO, CARLOS ENRIQUE, FEISS, MICHAEL · 2011 to 2014
$2.9M
STRUCTURE OF A SMALL SPHERICAL VIRUSR01AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI KUHN, RICHARD J. · 1985 to 2020
$2.4M
Linking Kinetics, Subunit Coordination & Structure of a Viral DNA Packaging MotorR01GM118817 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ARYA, GAURAV, CHEMLA, YANN R. · 2016 to 2019
$1.5M
Structural studies of bacteriophage T4 and their potential medical applicationsR56AI081726 · NIAID · PURDUE UNIVERSITY · PI ROSSMANN, MICHAEL G · 2009 to 2009
$600k
NIAID NIH HHS R01 AI011219NIAID NIH HHS R01 AI011676NIAID NIH HHS R01 AI081726NIAID NIH HHS R56 AI081726NIGMS NIH HHS R01 GM088186NIGMS NIH HHS R01 GM118817NIGMS NIH HHS T32 GM008326
6 · The paper itself

Abstract

Terminase enzyme complexes, which facilitate ATP-driven DNA packaging in phages and in many eukaryotic viruses, constitute a wide and potentially diverse family of molecular motors about which little dynamic or mechanistic information is available. Here we report optical tweezers measurements of single DNA molecule packaging dynamics in phage T4, a large, tailed Escherichia coli virus that is an important model system in molecular biology. We show that a complex is formed between the empty prohead and the large terminase protein (gp17) that can capture and begin packaging a target DNA molecule within a few seconds, thus demonstrating a distinct viral assembly pathway. The motor generates forces >60 pN, similar to those measured with phage phi29, suggesting that high force generation is a common property of viral DNA packaging motors. However, the DNA translocation rate for T4 was strikingly higher than that for phi29, averaging approximately 700 bp/s and ranging up to approximately 2,000 bp/s, consistent with packaging by phage T4 of an enormous, 171-kb genome in <10 min during viral infection and implying high ATP turnover rates of >300 s(-1). The motor velocity decreased with applied load but averaged 320 bp/s at 45 pN, indicating very high power generation. Interestingly, the motor also exhibited large dynamic changes in velocity, suggesting that it can assume multiple active conformational states gearing different translocation rates. This capability, in addition to the reversible pausing and slipping capabilities that were observed, may allow phage T4 to coordinate DNA packaging with other ongoing processes, including viral DNA transcription, recombination, and repair.

Indexed as

DNA PackagingBacteriophage T4Biomechanical PhenomenaDNA, ViralMolecular Motor ProteinsTime FactorsViral ProteinsDNA, Viralgp17 protein, Enterobacteria phage T4Molecular Motor ProteinsViral Proteins

Identifiers

PMID17942694
PMCPMC2040459
OpenAlexW1975729486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.