Evidence map›Paper›PMID 17942420›Full record

ArticleNucleic acids research2007

Deaminase-independent inhibition of HIV-1 reverse transcription by APOBEC3G.

Yasumasa Iwatani, Denise S B Chan, F Wang, Kristen Stewart-Maynard, Wataru Sugiura, Angela M Gronenborn, Ioulia Rouzina, Mark C Williams, Karin Musier-Forsyth, Judith G Levin

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 224 papers.

0numbers the graph read from it
0cells of the map it votes in
224citing papers in PubMed
7.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

224 citing papers in PubMed, 319 citations in OpenAlex.

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  16. Structural insights into PPP2R5A degradation by HIV-1 Vif.Nature structural & molecular biology · 2024
    Article
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  18. Article
  19. Article
  20. Article

164 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Yasumasa IwataniLaboratory of Molecular Genetics, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Denise S B Chan
F Wang
Kristen Stewart-Maynard
Wataru Sugiura
Angela M Gronenborn
Ioulia Rouzina
Mark C Williams
Karin Musier-Forsyth
Judith G Levin
National Institute of Infectious Diseases · JPNational Institutes of Health · USNortheastern University · US

Funding

Vif Antagonism: Lead Discovery and SAR - Project 1P01MH100942 · NIMH · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SCHULTZ-DARKEN, NANCY J · 2013 to 2017
$6.0M
RNA Binding and Packaging By Retroviral Gag ProteinsR01GM065056 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MUSIER-FORSYTH, KARIN M · 2002 to 2018
$4.9M
Single Molecule HIV-1 Replication InteractionsR01GM072462 · NIGMS · NORTHEASTERN UNIVERSITY · PI WILLIAMS, MARK C · 2004 to 2018
$3.9M
MOLECULAR GENETICS OF MAMMALIAN RETROVIRUS REPLICATIONZ01HD000069 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI LEVIN, JUDITH G · 1985 to 2008
$1.8M
Role of TrpRS in tRNATrp Packaging in Avian RetrovirusesF32GM072396 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI STEWART MAYNARD, KRISTEN M · 2004 to 2006
$137k
Intramural NIH HHSNIGMS NIH HHS F32 GM072396NIGMS NIH HHS GM065056NIGMS NIH HHS GM072462NIGMS NIH HHS R01 GM065056NIGMS NIH HHS R01 GM072462NIMH NIH HHS P01 MH100942
6 · The paper itself

Abstract

APOBEC3G (A3G), a host protein that inhibits HIV-1 reverse transcription and replication in the absence of Vif, displays cytidine deaminase and single-stranded (ss) nucleic acid binding activities. HIV-1 nucleocapsid protein (NC) also binds nucleic acids and has a unique property, nucleic acid chaperone activity, which is crucial for efficient reverse transcription. Here we report the interplay between A3G, NC and reverse transcriptase (RT) and the effect of highly purified A3G on individual reactions that occur during reverse transcription. We find that A3G did not affect the kinetics of NC-mediated annealing reactions, nor did it inhibit RNase H cleavage. In sharp contrast, A3G significantly inhibited all RT-catalyzed DNA elongation reactions with or without NC. In the case of (-) strong-stop DNA synthesis, the inhibition was independent of A3G's catalytic activity. Fluorescence anisotropy and single molecule DNA stretching analyses indicated that NC has a higher nucleic acid binding affinity than A3G, but more importantly, displays faster association/disassociation kinetics. RT binds to ssDNA with a much lower affinity than either NC or A3G. These data support a novel mechanism for deaminase-independent inhibition of reverse transcription that is determined by critical differences in the nucleic acid binding properties of A3G, NC and RT.

Indexed as

Reverse TranscriptionAPOBEC-3G DeaminaseBase SequenceCytidine DeaminaseDNA, Single-StrandedDNA, ViralFluorescence Polarizationgag Gene Products, Human Immunodeficiency VirusHIV-1HIV Reverse TranscriptaseHumansMolecular Sequence DataOptical TweezersRNAAPOBEC-3G DeaminaseAPOBEC3G protein, humanCytidine DeaminaseDNA, Single-StrandedDNA, Viralgag Gene Products, Human Immunodeficiency VirusHIV Reverse TranscriptaseNCP7 protein, Human immunodeficiency virus 1reverse transcriptase, Human immunodeficiency virus 1RNARNA primers

Identifiers

PMID17942420
PMCPMC2175344
OpenAlexW2127713363

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.