Evidence map›Paper›PMID 17940617›Full record

ArticlePloS one2007

The origins of novel protein interactions during animal opsin evolution.

David C Plachetzki, Bernard M Degnan, Todd H Oakley

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 126 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Expression of Opsins of the Box JellyfishFrontiers in neuroanatomy · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Evolution of Phototransduction Genes in Lepidoptera.Genome biology and evolution · 2019
    Article
  15. Transcriptome-wide analysis of differential gene expression in response to light:dark cycles in a model cnidarian.Comparative biochemistry and physiology. Part D, Genomics & proteomics · 2018
    Article
  16. Article
  17. Article
  18. The nervous and visual systems of onychophorans and tardigrades: learning about arthropod evolution from their closest relatives.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2017
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

David C PlachetzkiEcology, Evolution and Marine Biology, University of California at Santa Barbara, Santa Barbara, California, United States of America.
Bernard M Degnan
Todd H Oakley
University of California, Santa Barbara · USUniversity of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBiologists are gaining an increased understanding of the genetic bases of phenotypic change during evolution. Nevertheless, the origins of phenotypes mediated by novel protein-protein interactions remain largely undocumented. METHODOLOGY/PRINCIPLE

findingsHere we analyze the evolution of opsin visual pigment proteins from the genomes of early branching animals, including a new class of opsins from Cnidaria. We combine these data with existing knowledge of the molecular basis of opsin function in a rigorous phylogenetic framework. We identify adaptive amino acid substitutions in duplicated opsin genes that correlate with a diversification of physiological pathways mediated by different protein-protein interactions. CONCLUSIONS/SIGNIFICANCE: This study documents how gene duplication events early in the history of animals followed by adaptive structural mutations increased organismal complexity by adding novel protein-protein interactions that underlie different physiological pathways. These pathways are central to vision and other photo-reactive phenotypes in most extant animals. Similar evolutionary processes may have been at work in generating other metazoan sensory systems and other physiological processes mediated by signal transduction.

Indexed as

Evolution, MolecularProtein Interaction MappingAnimalsCnidariaIn Situ HybridizationLightLikelihood FunctionsMarkov ChainsModels, BiologicalPhenotypePhylogenyRod OpsinsSignal TransductionSpecies SpecificityRod Opsins

Identifiers

PMID17940617
PMCPMC2013938
OpenAlexW2007749893

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.