ArticleNucleic acids research2008
Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments.
Article in Nucleic acids research, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 3 of them syntheses that pooled it.
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The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
41 citing papers in PubMed, 3 syntheses or guidelines pooled it.
- Meta-analysis reveals conserved cell cycle transcriptional network across multiple human cell types.BMC genomics · 2017Pooled it
- Phase Coupled Meta-analysis: sensitive detection of oscillations in cell cycle gene expression, as applied to fission yeast.BMC genomics · 2009Pooled it
- A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide.Bioinformatics (Oxford, England) · 2009Pooled it
- Inverse Modulation of Aurora Kinase A and Topoisomerase IIα in Normal and Tumor Breast Cells upon Knockdown of Mitochondrial ASncmtRNA.Non-coding RNA · 2023Article
- Universal prediction of cell-cycle position using transfer learning.Genome biology · 2022Article
- Codon usage similarity between viral and some host genes suggests a codon-specific translational regulation.Heliyon · 2020Article
- Unbiased Boolean analysis of public gene expression data for cell cycle gene identification.Molecular biology of the cell · 2019Article
- The deubiquitylase USP15 regulates topoisomerase II alpha to maintain genome integrity.Oncogene · 2018Article
- Comparison of structures amongGenes and environment : the official journal of the Japanese Environmental Mutagen Society · 2018Review
- Regulation of the cell cycle and centrosome biology by deubiquitylases.Biochemical Society transactions · 2017Review
- Order restricted inference for oscillatory systems for detecting rhythmic signals.Nucleic acids research · 2016Article
- Principal component analysis based unsupervised feature extraction applied to budding yeast temporally periodic gene expression.BioData mining · 2016Article
- Genome and transcriptome delineation of two major oncogenic pathways governing invasive ductal breast cancer development.Oncotarget · 2015Article
- A novel role for lncRNAs in cell cycle control during stress adaptation.Current genetics · 2015Review
- Redeployment of Myc and E2f1-3 drives Rb-deficient cell cycles.Nature cell biology · 2015Article
- Article
- Visualizing time-related data in biology, a review.Briefings in bioinformatics · 2014Review
- Review
- Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression.Molecular systems biology · 2014Article
- Loss of heterozygosity preferentially occurs in early replicating regions in cancer genomes.Nucleic acids research · 2013Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The past decade has seen the publication of a large number of cell-cycle microarray studies and many more are in the pipeline. However, data from these experiments are not easy to access, combine and evaluate. We have developed a centralized database with an easy-to-use interface, Cyclebase.org, for viewing and downloading these data. The user interface facilitates searches for genes of interest as well as downloads of genome-wide results. Individual genes are displayed with graphs of expression profiles throughout the cell cycle from all available experiments. These expression profiles are normalized to a common timescale to enable inspection of the combined experimental evidence. Furthermore, state-of-the-art computational analyses provide key information on both individual experiments and combined datasets such as whether or not a gene is periodically expressed and, if so, the time of peak expression. Cyclebase is available at http://www.cyclebase.org.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.