Evidence map›Paper›PMID 17938952›Full record

ReviewLangenbeck's archives of surgery2008

From the genome to the proteome--biomarkers in colorectal cancer.

Jens K Habermann, Franz G Bader, Christian Franke, Kaja Zimmermann, Timo Gemoll, Britta Fritzsche, Thomas Ried, Gert Auer, Hans-Peter Bruch, Uwe J Roblick

Abstract readReview
PubMed Publisher
In one paragraph

Review in Langenbeck's archives of surgery, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Serum tests for colorectal cancer screening.Molecular diagnosis & therapy · 2011
    Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Cell surface markers in colorectal cancer prognosis.International journal of molecular sciences · 2010
    Review
  10. Biomarkers for colorectal cancer.International journal of molecular sciences · 2010
    Review
  11. Article
  12. Article
  13. Review
  14. Genetic tests and genomic biomarkers: regulation, qualification and validation.Clinical cases in mineral and bone metabolism : the official journal of the Italian Society of Osteoporosis, Mineral Metabolism, and Skeletal Diseases · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Jens K HabermannDepartment of Surgery, University of Schleswig-Holstein Campus Lübeck, Ratzeburger Allee 160, 23538 Lübeck, Germany. Jens.Habermann@gmail.com
Franz G Bader
Christian Franke
Kaja Zimmermann
Timo Gemoll
Britta Fritzsche
Thomas Ried
Gert Auer
Hans-Peter Bruch
Uwe J Roblick
University of Lübeck · DEKarolinska Institutet · SENational Cancer Institute · US

Funding

Identification and functional characterization of colorectal cancer genesZIABC010833 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RIED, THOMAS · 2009 to 2022
$12.1M
Prediction of Therapy Response in Colorectal CancerZIABC010837 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RIED, THOMAS · 2009 to 2022
$8.9M
Consequences of Genomic Instability and Aneuploidy on the Colorectal Cancer TranZIABC010835 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RIED, THOMAS · 2009 to 2016
$6.8M
Cancer GenomicsZIABC010836 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RIED, THOMAS · 2009 to 2011
$1.8M
Identification and functional characterization of colorectal cancer genesZ01BC010833 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RIED, THOMAS · 2007 to 2008
$1.5M
Understanding the mechanisms of chromosomal aberrations in cancerZ01BC010837 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RIED, THOMAS · 2007 to 2008
$1.3M
Consequences of Genomic Instability and Aneuploidy on the Colorectal Cancer Z01BC010835 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RIED, THOMAS · 2007 to 2008
$1.3M
Cancer proteomicsZ01BC010836 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RIED, THOMAS · 2007 to 2008
$1.1M
6 · The paper itself

Abstract

BACKGROUND AND

aimsColorectal cancer is the second leading cause of cancer-related death. Current clinical practice in colorectal cancer screening (fecal occult blood test, FOBT; colonoscopy) has contributed to a reduction of mortality. However, despite these screening programs, about 70% of carcinomas are detected at advanced tumor stages (UICC III/IV) presenting poor patient prognosis. Thus, innovative tools and methodologies for early cancer detection can directly result in improving patient survival rates. PATIENTS/

methodsBiomedical research has advanced rapidly in recent years with the availability of technologies such as global gene and protein expression profiling. Comprehensive tumor profiling has become a field of intensive research aiming at identifying biomarkers relevant for improved diagnostics and therapeutics.

resultsIn this paper, we report a comprehensive review of genomic, transcriptomic, and proteomic approaches for biomarker identification in tissue and blood with a main emphasis on two-dimensional gel-electrophoresis (2-DE) and mass spectrometry analyses.

conclusionProteomics-based technologies enable to distinguish the healthy patient from the tumor patient with high sensitivity and specificity and could greatly improve common classification systems and diagnostics. However, this progress has not yet been transferred from bench to bedside but could open the door to a more accurate and target specific personalized medicine with improved patient survival.

Indexed as

GenomeProteomeAneuploidyBiomarkers, TumorColorectal NeoplasmsElectrophoresis, Gel, Two-DimensionalGene Expression ProfilingGenetic MarkersHumansMass SpectrometryNeoplasm StagingPredictive Value of TestsProtein Array AnalysisSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBiomarkers, TumorGenetic MarkersProteome

Identifiers

PMID17938952
OpenAlexW2023099482

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.