Evidence map›Paper›PMID 17938208›Full record

ArticleMolecular and cellular biology2007

CHD8 associates with human Staf and contributes to efficient U6 RNA polymerase III transcription.

Chih-Chi Yuan, Xinyang Zhao, Laurence Florens, Selene K Swanson, Michael P Washburn, Nouria Hernandez

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 71 citations in OpenAlex.

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  11. RNA Polymerase II Activity of Type 3 Pol III Promoters.Molecular therapy. Nucleic acids · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Chih-Chi YuanStony Brook University, Graduate Program in Molecular and Cellular Biology, Stony Brook, New York 11794, USA.
Xinyang Zhao
Laurence Florens
Selene K Swanson
Michael P Washburn
Nouria Hernandez
Stowers Institute for Medical Research · USCold Spring Harbor Laboratory · USMemorial Sloan Kettering Cancer Center · USUniversity of Lausanne · CH

Funding

EXPRESSION OF SNRNA GENESR01GM038810 · NIGMS · COLD SPRING HARBOR LABORATORY · PI STENLUND, ARNE · 1987 to 2006
$1.5M
NIGMS NIH HHS GM38810NIGMS NIH HHS R01 GM038810
6 · The paper itself

Abstract

Chromatin remodeling and histone modification are essential for eukaryotic transcription regulation, but little is known about chromatin-modifying activities acting on RNA polymerase III (Pol III)-transcribed genes. The human U6 small nuclear RNA promoter, located 5' of the transcription start site, consists of a core region directing basal transcription and an activating region that recruits the transcription factors Oct-1 and Staf (ZNF143). Oct-1 activates transcription in part by helping recruit core binding factors, but nothing is known about the mechanisms of transcription activation by Staf. We show that Staf activates U6 transcription from a preassembled chromatin template in vitro and associates with several proteins linked to chromatin modification, among them chromodomain-helicase-DNA binding protein 8 (CHD8). CHD8 binds to histone H3 di- and trimethylated on lysine 4. It resides on the human U6 promoter as well as the mRNA IRF3 promoter in vivo and contributes to efficient transcription from both these promoters. Thus, Pol III transcription from type 3 promoters uses some of the same factors used for chromatin remodeling at Pol II promoters.

Indexed as

Transcription, GeneticAmino Acid SequenceChromatinDNA-Binding ProteinsHeLa CellsHistonesHumansImmunoprecipitationInterferon Regulatory Factor-3LysineMethylationMolecular Sequence DataProtein BindingProtein TransportRNA Polymerase IIIRNA, Small NuclearCHD8 protein, humanChromatinDNA-Binding ProteinsHistonesInterferon Regulatory Factor-3IRF3 protein, humanLysineRNA Polymerase IIIRNA, Small NuclearTrans-ActivatorsTranscription FactorsU1 small nuclear RNAU6 small nuclear RNAZNF143 protein, human

Identifiers

PMID17938208
PMCPMC2169411
OpenAlexW2141903266

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.