Evidence map›Paper›PMID 17933856›Full record

ArticleBioinformatics (Oxford, England)2007

InterProSurf: a web server for predicting interacting sites on protein surfaces.

Surendra S Negi, Catherine H Schein, Numan Oezguen, Trevor D Power, Werner Braun

Open access · bronzeAbstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 184 citations in OpenAlex.

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  14. Software and Databases for Protein-Protein Docking.Methods in molecular biology (Clifton, N.J.) · 2024
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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Surendra S NegiDepartment of Biochemistry and Molecular Biology, Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, Texas 77555-0857, USA.
Catherine H Schein
Numan Oezguen
Trevor D Power
Werner Braun
The University of Texas Medical Branch at Galveston · US

Funding

Development of Therapeutic Inhibitors to Anthrax ToxinsU01AI053858 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PETERSON, JOHNNY WAYNE · 2002 to 2006
$2.5M
Computational tools for T- and B-cell epitope predictionR01AI064913 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI BRAUN, WERNER A · 2005 to 2010
$1.6M
Interacting motifs of alphavirus envelope proteins.R21AI055746 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI BRAUN, WERNER A · 2003 to 2004
$598k
NIAID NIH HHS 5UO1-AI053858-03NIAID NIH HHS R01 AI064913NIAID NIH HHS R21 AI055746NIAID NIH HHS U01 AI053858
6 · The paper itself

Abstract

unlabelledA new web server, InterProSurf, predicts interacting amino acid residues in proteins that are most likely to interact with other proteins, given the 3D structures of subunits of a protein complex. The prediction method is based on solvent accessible surface area of residues in the isolated subunits, a propensity scale for interface residues and a clustering algorithm to identify surface regions with residues of high interface propensities. Here we illustrate the application of InterProSurf to determine which areas of Bacillus anthracis toxins and measles virus hemagglutinin protein interact with their respective cell surface receptors. The computationally predicted regions overlap with those regions previously identified as interface regions by sequence analysis and mutagenesis experiments. AVAILABILITY: The InterProSurf web server is available at http://curie.utmb.edu/

Indexed as

AlgorithmsInternetSoftwareBinding SitesProtein BindingProtein Interaction MappingProteinsSequence AlignmentSequence Analysis, ProteinProteins

Identifiers

PMID17933856
PMCPMC2636624
OpenAlexW2130606742

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.