Evidence map›Paper›PMID 17933760›Full record

ArticleNucleic acids research2007

In vivo construction of recombinant molecules within the Caenorhabditis elegans germ line using short regions of terminal homology.

Benedict J Kemp, Julia Hatzold, Laura A Sternick, Joshua Cornman-Homonoff, Jessica M Whitaker, Pamela J Tieu, Eric J Lambie

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.2field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Nematode chromosomes.Genetics · 2022
    Review
  4. Article
  5. G3 (Bethesda, Md.) · 2019
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Benedict J KempDepartment of Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.
Julia Hatzold
Laura A Sternick
Joshua Cornman-Homonoff
Jessica M Whitaker
Pamela J Tieu
Eric J Lambie
Dartmouth College · US

Funding

CONTROL OF NEMATODE GERMLINE DEVELOPMENTR01GM049785 · NIGMS · DARTMOUTH COLLEGE · PI LAMBIE, ERIC JOHN · 1993 to 2005
$1.3M
NIGMS NIH HHS R01 GM049785NIGMS NIH HHS R01GM49785
6 · The paper itself

Abstract

Homologous recombination provides a means for the in vivo construction of recombinant DNA molecules that may be problematic to assemble in vitro. We have investigated the efficiency of recombination within the Caenorhabditis elegans germ line as a function of the length of homology between recombining molecules. Our findings indicate that recombination can occur between molecules that share only 10 bp of terminal homology, and that 25 bp is sufficient to mediate relatively high levels of recombination. Recombination occurs with lower efficiency when the location of the homologous segment is subterminal or internal. As in yeast, recombination can also be mediated by either single- or double-stranded bridging oligonucleotides. We find that ligation between cohesive ends is highly efficient and does not require that the ends be phosphorylated; furthermore, precise intermolecular ligation between injected molecules that have blunt ends can also occur within the germ line.

Indexed as

Recombination, GeneticAnimalsCaenorhabditis elegansDNA, CircularDNA, RecombinantEnhancer Elements, GeneticGenetic EngineeringGerm CellsGreen Fluorescent ProteinsOligonucleotidesPolymerase Chain ReactionPromoter Regions, GeneticSequence Homology, Nucleic AcidDNA, CircularDNA, RecombinantGreen Fluorescent ProteinsOligonucleotides

Identifiers

PMID17933760
PMCPMC2095804
OpenAlexW2162641107

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.