Evidence map›Paper›PMID 17933216›Full record

ArticleGene expression2007

Gene regulation networks related to neural differentiation of hESC.

Jiang F Zhong, Yahui Song, Jing Du, Christine Gamache, Kathleen A Burke, Brett T Lund, Leslie P Weiner

Open access · hybridAbstract read
In one paragraph

Article in Gene expression, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Increase developmental plasticity of human keratinocytes with gene suppression.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jiang F ZhongDepartment of Neurology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA. jzhong@usc.edu
Yahui Song
Jing Du
Christine Gamache
Kathleen A Burke
Brett T Lund
Leslie P Weiner
University of Southern California · US

Funding

Ultrasensitive Nanofluidic Devices for Genomic AnalysisR01HG002644 · NHGRI · STANFORD UNIVERSITY · PI QUAKE, STEPHEN R · 2004 to 2008
$5.1M
NHGRI NIH HHS 1R01 HG002644-01A1NHGRI NIH HHS R01 HG002644
6 · The paper itself

Abstract

With the unique property of self-renewal and developmental pluripotency, human embryonic stem cells (hESC) provide an opportunity to study molecular aspects of developmental biology. Understanding gene regulation of hESC pluripotency is a critical step toward directing hESC differentiation for regenerative medicine. However, currently little is known about hESC gene regulation of hESC pluripotency. Applying network analysis to microarray gene expression profiling data, we compared gene expression profiles from pluripotent hESC to hESC-derived astrocytes and identified potential gene regulation networks. These gene regulation networks suggest that hECS has stringent control of cell cycle and apoptosis. Our data reveal several potential hESC differentiation biomarkers and suggest that IGF2 and A2M could play a role in hESC pluripotency by altering the availability of cytokines at the local environment of hECS. These findings underscore the importance of network analysis among differentially expressed genes, and should facilitate future study for understanding the gene regulation of hESC pluripotency.

Indexed as

Gene Regulatory NetworksAstrocytesBiomarkersCell DifferentiationCells, CulturedEmbryo, MammalianGene Expression ProfilingGene Expression RegulationHumansModels, GeneticNeurogliaOligonucleotide Array Sequence AnalysisPluripotent Stem CellsBiomarkers

Identifiers

PMID17933216
PMCPMC6042016
OpenAlexW2008487941

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.