Evidence map›Paper›PMID 17933214›Full record

ArticleGene expression2007

Retinoic acid inducibility of the human PDGF-a gene is mediated by 5'-distal DNA motifs that overlap with basal enhancer and vitamin D response elements.

Nancy G Pedigo, Hongxing Zhang, Anjali Mishra, Joseph R McCorkle, Angela K Ormerod, David M Kaetzel

Open access · hybridAbstract read
In one paragraph

Article in Gene expression, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Nancy G PedigoDepartment of Molecular and Biomedical Pharmacology, University of Kentucky College of Medicine, Lexington, KY 40536-0298, USA.
Hongxing Zhang
Anjali Mishra
Joseph R McCorkle
Angela K Ormerod
David M Kaetzel
University of Kentucky · US

Funding

NM23 PROTEINS AND MECHANISMS OF PDGF A CHAIN SILENCINGR01CA083237 · NCI · UNIVERSITY OF KENTUCKY · PI KAETZEL, DAVID M · 1999 to 2010
$1.9M
PDGF GENE REGULATION BY VITAMINS A &D IN ALVEOLIZATIONR01HL062877 · NHLBI · UNIVERSITY OF KENTUCKY · PI KAETZEL, DAVID M · 2000 to 2003
$903k
NCI NIH HHS CA 83237NCI NIH HHS R01 CA083237NHLBI NIH HHS HL 62877
6 · The paper itself

Abstract

Retinoic acid (RA) upregulates expression of PDGF ligands and receptors in neonatal rat lung fibroblasts, a process likely to promote maturation of the lung alveolus and possibly microstructures of other organs. A mutational analysis of the gene encoding the PDGF-A ligand has identified a complex retinoic acid response element (RARE) located far upstream of the transcription start site, in a 5'-distal enhanceosome region previously shown to harbor basal and vitamin D-inducible enhancer activity. Maximal RA responsiveness (fourfold) was conferred by nucleotide sequence located between -7064 and -6787, with a variety of deletion and point mutations revealing the importance of at least three nuclear receptor half-sites within the enhancer region (-6851 to -6824), as well as nucleotides located further upstream. Recombinant human retinoic acid receptor/retinoid-X receptor heterodimers bound with high affinity and sequence specificity to multiple regions within the RARE, as demonstrated by electrophoretic mobility shift and DNase I footprinting assays. The addition of RARE activity to previously described functions of the 5'-distal enhanceosome underscores the importance of this region as a key integration point for regulatory control of PDGF-A expression.

Indexed as

5' Flanking RegionBase SequenceCell LineDNADose-Response Relationship, DrugEnhancer Elements, GeneticGenes, ReporterHumansLuciferasesMolecular Sequence DataPlatelet-Derived Growth FactorReceptors, Retinoic AcidRecombinant ProteinsResponse ElementsRetinoic Acid Receptor alphaRetinoid X Receptor alphaDNALuciferasesPlatelet-Derived Growth Factorplatelet-derived growth factor ARARA protein, humanRara protein, ratReceptors, Retinoic AcidRecombinant ProteinsRetinoic Acid Receptor alphaRetinoid X Receptor alphaRNA, MessengerTretinoinVitamin D

Identifiers

PMID17933214
PMCPMC6042017
OpenAlexW2035127300

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.