Evidence map›Paper›PMID 17921318›Full record

ArticleRNA (New York, N.Y.)2007

Human ribosomal protein L13a is dispensable for canonical ribosome function but indispensable for efficient rRNA methylation.

Sujan Chaudhuri, Keyur Vyas, Purvi Kapasi, Anton A Komar, Jonathan D Dinman, Sailen Barik, Barsanjit Mazumder

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Article
  3. Loss of function of ribosomal protein L13a blocks blastocyst formation and reveals a potential nuclear role in gene expression.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2023
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. High-fat diet-induced GAIT element-mediated translational silencing of mRNAs encoding inflammatory proteins in macrophage protects against atherosclerosis.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Ribosome Stoichiometry: From Form to Function.Trends in biochemical sciences · 2019
    Review
  15. Review
  16. The GAIT translational control system.Wiley interdisciplinary reviews. RNA · 2018
    Review
  17. Article
  18. Ribosomal Proteins Control or Bypass p53 during Nucleolar Stress.International journal of molecular sciences · 2017
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Sujan ChaudhuriDepartment of Biological, Geological and Environmental Sciences, Cleveland State University, Cleveland, Ohio 44115, USA.
Keyur Vyas
Purvi Kapasi
Anton A Komar
Jonathan D Dinman
Sailen Barik
Barsanjit Mazumder
Cleveland State University · USUniversity of Maryland, College Park · USUniversity of South Alabama · US

Funding

Translational Silencing in Monocytes: Role of L13aR01HL079164 · NHLBI · CLEVELAND STATE UNIVERSITY · PI MAZUMDER, BARSANJIT · 2005 to 2019
$4.5M
Translational Fidelity in EukaryotesR01GM058859 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI DINMAN, JONATHAN D · 1999 to 2011
$3.8M
Mechanisms of RNA virus-host interactionR01AI059267 · NIAID · UNIVERSITY OF SOUTH ALABAMA · PI BARIK, SAILEN · 2005 to 2009
$1.2M
NHLBI NIH HHS HL79164NHLBI NIH HHS R01 HL079164NIAID NIH HHS AI059267NIAID NIH HHS R01 AI059267NIGMS NIH HHS GM058859NIGMS NIH HHS R01 GM058859
6 · The paper itself

Abstract

Previously, we demonstrated that treatment of monocytic cells with IFN-gamma causes release of ribosomal protein L13a from the 60S ribosome and subsequent translational silencing of Ceruloplasmin (Cp) mRNA. Here, evidence using cultured cells demonstrates that Cp mRNA silencing is dependent on L13a and that L13a-deficient ribosomes are competent for global translational activity. Human monocytic U937 cells were stably transfected with two different shRNA sequences for L13a and clonally selected for more than 98% abrogation of total L13a expression. Metabolic labeling of these cells showed rescue of Cp translation from the IFN-gamma mediated translational silencing activity. Depletion of L13a caused significant reduction of methylation of ribosomal RNA and of cap-independent translation mediated by Internal Ribosome Entry Site (IRES) elements derived from p27, p53, and SNAT2 mRNAs. However, no significant differences in the ribosomal RNA processing, polysome formation, global translational activity, translational fidelity, and cell proliferation were observed between L13a-deficient and wild-type control cells. These results support the notion that ribosome can serve as a depot for releasable translation-regulatory factors unrelated to its basal polypeptide synthetic function. Unlike mammalian cells, the L13a homolog in yeast is indispensable for growth. Thus, L13a may have evolved from an essential ribosomal protein in lower eukaryotes to having a role as a dispensable extra-ribosomal function in higher eukaryotes.

Indexed as

Cell Line, TumorGene Expression Regulation, NeoplasticGenetic VectorsHumansLentivirusRecombinant ProteinsRibosomal ProteinsRibosomesRNA InterferenceRNA, NeoplasmRNA, RibosomalTransfectiontRNA MethyltransferasesU937 CellsRecombinant ProteinsRibosomal ProteinsRNA, NeoplasmRNA, RibosomalRPL13A protein, humantRNA Methyltransferases

Identifiers

PMID17921318
PMCPMC2080596
OpenAlexW2120272119

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.