Evidence map›Paper›PMID 17917676›Full record

ArticleGenes and immunity2007

Reduced in vitro functional activity of human NRAMP1 (SLC11A1) allele that predisposes to increased risk of pediatric tuberculosis disease.

C J Gallant, S Malik, N Jabado, M Cellier, L Simkin, B B Finlay, E A Graviss, P Gros, J M Musser, E Schurr

Open access · bronzeAbstract read
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In one paragraph

Article in Genes and immunity, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Leprosy as a genetic disease.Mammalian genome : official journal of the International Mammalian Genome Society · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

C J GallantMcGill Centre for the Study of Host Resistance, Research Institute of the McGill University Health Centre, Montreal, Quebec, Canada.
S Malik
N Jabado
M Cellier
L Simkin
B B Finlay
E A Graviss
P Gros
J M Musser
E Schurr
McGill University · CAMcGill University Health Centre · CABaylor College of Medicine · USHouston Methodist · USInstitut National de la Recherche Scientifique · CAUniversity of British Columbia · CA

Funding

GENETIC EPIDEMIOLOGY OF TUBERCULOSIS SUSCEPTIBILITYR01AI041168 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI GRAVISS, EDWARD A · 1997 to 2001
$1.0M
NIAID NIH HHS R01 AI41168-01
6 · The paper itself

Abstract

Polymorphic variants within the human natural resistance-associated macrophage protein-1 (NRAMP1, also known as SLC11A1) gene have been shown to impact on susceptibility to tuberculosis in different human populations. In the mouse, Nramp1 is expressed at the macrophage phagosomal membrane and its activity can be assayed by the relative acquisition of mannose 6-phosphate receptor (M6PR) in Salmonella-containing vacuoles. Based on this M6PR recruitment assay, we have now developed an assay in primary human macrophages to test the function of human NRAMP1 gene variants. First, we established that M6PR acquisition was significantly higher (P = 0.002) in human U-937 monocytic cell lines transfected with NRAMP1 as compared to untransfected U-937 cells. Second, the M6PR assay was shown to be highly reproducible for NRAMP1 activity in monocyte-derived macrophages (MDM) from healthy volunteers. Finally, the assay was investigated in MDM from pediatric tuberculosis patients and significantly lower NRAMP1 activity was detected in MDM from individuals homozygous for the NRAMP1-274 high-risk allele (CC genotype) in comparison to heterozygous individuals (CT genotype; P=0.013). The present study describes both an assay for human NRAMP1 functional activity and concomitant evidence for reduced NRAMP1 function in the common genetic variant shown to be associated with tuberculosis susceptibility in pediatric patients.

Indexed as

Genetic Predisposition to DiseaseAllelesBiological AssayCation Transport ProteinsCell LineChildEndosomesFemaleHumansLysosomal-Associated Membrane Protein 1MacrophagesMaleNatural Resistance-associated Macrophage Protein 1PhagocytosisReceptor, IGF Type 2RiskCation Transport ProteinsLysosomal-Associated Membrane Protein 1Natural Resistance-associated Macrophage Protein 1Receptor, IGF Type 2

Identifiers

PMID17917676
OpenAlexW1963625613

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.