Evidence map›Paper›PMID 17916325›Full record

ArticleBiochimica et biophysica acta2007

NMR structural studies of the bacterial outer membrane protein OmpX in oriented lipid bilayer membranes.

Radhakrishnan Mahalakshmi, Carla M Franzin, Jungyuen Choi, Francesca M Marassi

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Recombinant Expression and Overproduction of Transmembrane β-Barrel Proteins.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  2. Article
  3. Article
  4. Transmembrane β-barrels: Evolution, folding and energetics.Biochimica et biophysica acta. Biomembranes · 2017
    Review
  5. Article
  6. Membrane protein structure determination in membrana.Accounts of chemical research · 2013
    Article
  7. Charge asymmetry in the proteins of the outer membrane.Bioinformatics (Oxford, England) · 2013
    Article
  8. Membrane protein structure determination: back to the membrane.Methods in molecular biology (Clifton, N.J.) · 2013
    Article
  9. Article
  10. Article
  11. Structure determination of a membrane protein in proteoliposomes.Journal of the American Chemical Society · 2012
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

4 authors.

Radhakrishnan MahalakshmiBurnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA.
Carla M Franzin
Jungyuen Choi
Francesca M Marassi

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI Michael Jackson · 1985 to 2026
$107.2M
RESOURCE FOR SOLID STATE NMR OF PROTEINSP41EB002031 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2003 to 2018
$16.3M
Structure of- beta barrel membrane protein-lipid bi(RMI)R21GM075917 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI MARASSI, FRANCESCA M · 2005 to 2006
$474k
NCI NIH HHS P30 CA030199NCI NIH HHS P30CA030199NIBIB NIH HHS P41 EB002031NIBIB NIH HHS P41EB002031NIGMS NIH HHS R21 GM075917NIGMS NIH HHS R21GM075917
6 · The paper itself

Abstract

The beta-barrels found in the outer membranes of prokaryotic and eukaryotic organisms constitute an important functional class of proteins. Here we present solid-state NMR spectra of the bacterial outer membrane protein OmpX in oriented lipid bilayer membranes. We show that OmpX is folded in both glass-supported oriented lipid bilayers and in lipid bicelles that can be magnetically oriented with the membrane plane parallel or perpendicular to the direction of the magnetic field. The presence of resolved peaks in these spectra demonstrates that OmpX undergoes rotational diffusion around an axis perpendicular to the membrane surface. A tightly hydrogen-bonded domain of OmpX resists exchange with D2O for days and is assigned to the transmembrane beta-barrel, while peaks at isotropic resonance frequencies that disappear rapidly in D2O are assigned to the extracellular and periplasmic loops. The two-dimensional 1H/15N separated local field spectra of OmpX have several resolved peaks, and agree well with the spectra calculated from the crystal structure of OmpX rotated with the barrel axis nearly parallel (5 degrees tilt) to the direction of the magnetic field. The data indicate that it will be possible to obtain site-specific resonance assignments and to determine the structure, tilt, and rotation of OmpX in membranes using the solid-state NMR methods that are currently being applied to alpha-helical membrane proteins.

Indexed as

Amino Acid SequenceBacterial Outer Membrane ProteinsElectrophoresis, Polyacrylamide GelEscherichia coli ProteinsHydrolasesLipid BilayersMagnetic Resonance SpectroscopyMolecular Sequence DataBacterial Outer Membrane ProteinsEscherichia coli ProteinsHydrolasesLipid BilayersOmpX protein, E coli

Identifiers

PMID17916325
PMCPMC2369366

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.