Evidence map›Paper›PMID 17913884›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes.

Bong Kim, Alexey I Nesvizhskii, P Geetha Rani, Steven Hahn, Ruedi Aebersold, Jeffrey A Ranish

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 106 citations in OpenAlex.

  1. Article
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  9. Review
  10. Structural basis for evolutionarily conserved interactions between TFIIS and Paf1C.International journal of biological macromolecules · 2023
    Article
  11. Article
  12. Review
  13. Article
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  17. Review
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Bong KimInstitute for Systems Biology, 1441 North 34th Street, Seattle, WA 98103, USA.
Alexey I Nesvizhskii
P Geetha Rani
Steven Hahn
Ruedi Aebersold
Jeffrey A Ranish
Institute for Systems Biology · USFred Hutch Cancer Center · US

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
MOLECULAR ANALYSIS OF RNAPIII TRANSCRIPTION INITIATIONR01GM053451 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HAHN, STEVEN M · 1995 to 2020
$11.4M
NHLBI PROTEOMICS INITIATIVE-268028179N01HV028179 · HV · INSTITUTE FOR SYSTEMS BIOLOGY · 2002 to 2002
–
NHLBI NIH HHS HV-28179NHLBI NIH HHS N01 HV028179NIGMS NIH HHS GM53451NIGMS NIH HHS P50 GM076547NIGMS NIH HHS PM50GM076547NIGMS NIH HHS R01 GM053451
6 · The paper itself

Abstract

In this article, we provide direct evidence that the evolutionarily conserved transcription elongation factor TFIIS functions during preinitiation complex assembly. First, we identified TFIIS in a mass spectrometric screen of RNA polymerase II (Pol II) preinitiation complexes (PICs). Second, we show that the association of TFIIS with a promoter depends on functional PIC components including Mediator and the SAGA complex. Third, we demonstrate that TFIIS is required for efficient formation of active PICs. Using truncation mutants of TFIIS, we find that the Pol II-binding domain is the minimal domain necessary to stimulate PIC assembly. However, efficient formation of active PICs requires both the Pol II-binding domain and the poorly understood N-terminal domain. Importantly, Domain III, which is required for the elongation function of TFIIS, is dispensable during PIC assembly. The results demonstrate that TFIIS is a PIC component that is required for efficient formation and/or stability of the complex.

Indexed as

Binding SitesDNA, FungalMultiprotein ComplexesPromoter Regions, GeneticProtein Structure, TertiaryRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence DeletionTandem Mass SpectrometryTranscriptional Elongation FactorsTranscription, GeneticDNA, FungalMultiprotein ComplexesRNA Polymerase IISaccharomyces cerevisiae ProteinsTranscriptional Elongation Factorstranscription factor S-II

Identifiers

PMID17913884
PMCPMC2042163
OpenAlexW2083387716

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.