Evidence map›Paper›PMID 17909205›Full record

ArticleAnnals of internal medicine2007

Validity of models for predicting BRCA1 and BRCA2 mutations.

Giovanni Parmigiani, Sining Chen, Edwin S Iversen, Tara M Friebel, Dianne M Finkelstein, Hoda Anton-Culver, Argyrios Ziogas, Barbara L Weber, Andrea Eisen, Kathleen E Malone and 18 more

Abstract readMulticenter StudyValidation Study
In one paragraph

Article in Annals of internal medicine, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Performance of prediction models for BRCA mutation carriage in three racial/ethnic groups: findings from the Northern California Breast Cancer Family Registry.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2009
    Trial
  4. Article
  5. BRCA Testing in Asian Patients with Ovarian Cancer: Standard Clinical Practice or Mutation Prediction Model?Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
    Article
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  8. Recurrent high-impact mutations at cognate structural positions in class A G protein-coupled receptors expressed in tumors.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  12. Prevalence ofGeburtshilfe und Frauenheilkunde · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors.

Giovanni ParmigianiThe Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, Maryland 21205-2011, USA. gp@jhu.edu
Sining Chen
Edwin S Iversen
Tara M Friebel
Dianne M Finkelstein
Hoda Anton-Culver
Argyrios Ziogas
Barbara L Weber
Andrea Eisen
Kathleen E Malone
Janet R Daling
Li Hsu
Elaine A Ostrander
Leif E Peterson
Joellen M Schildkraut
Claudine Isaacs
Camille Corio
Leoni Leondaridis
Gail Tomlinson
Christopher I Amos
Louise C Strong
Donald A Berry
Jeffrey N Weitzel
Sharon Sand
Debra Dutson
Rich Kerber
Beth N Peshkin
David M Euhus

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI Rosalie Wollett · 1985 to 2026
$208.6M
ZOPOLRESTAT IN NORMOTENSIVE, TYPE 1 DIA WITH INCIPIENT NEPHROPATHYM01RR000043 · NCRR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ZAIA, JOHN A · 1985 to 2010
$76.4M
Tissue Culture Shared ResourceP30CA051008 · NCI · GEORGETOWN UNIVERSITY · PI STEPHEN W BYERS · 1990 to 2026
$71.5M
Tumor Antigens for Individual Signatures and TherapyP50CA062924 · NCI · JOHNS HOPKINS UNIVERSITY · PI LENNON, ANNE MARIE · 1993 to 2022
$54.6M
VACCINES--A NEW PARADIGM FOR BREAST CANCERP50CA088843 · NCI · JOHNS HOPKINS UNIVERSITY · PI DAVIDSON, NANCY ELLEN · 2000 to 2010
$27.8M
COORDINATING CENTER FOR THE CANCER GENETICS NETWORKU01CA078284 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI FINKELSTEIN, DIANNE M · 1998 to 2006
$6.0M
Clinical Cancer Genetics Community Network: A Sustainable Research PartnershipRC4CA153828 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI WEITZEL, JEFFREY N · 2010 to 2010
$1.0M
Statistical Methods for Cancer GenesR01CA105090 · NCI · JOHNS HOPKINS UNIVERSITY · PI PARMIGIANI, GIOVANNI · 2004 to 2007
$997k
Genetics of Cancer Susceptibility--Multisystem ApproachK05CA090754 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI OSTRANDER, ELAINE A · 2001 to 2004
$373k
Mechanisms of 5-hydroxytryptamine-induced hypotensionF30HL099024 · NHLBI · MICHIGAN STATE UNIVERSITY · PI DAVIS, ROBERT PATRICK · 2010 to 2013
$137k
POPULATION BASED GENETIC ANALYSIS OF BREAST CANCERR01CA063705 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI OSTRANDER, ELAINE A · 1994 to 1998
–
NCI NIH HHS 5P30 CA06973-39NCI NIH HHS CA78284NCI NIH HHS K05 CA090754NCI NIH HHS K05 CA-90754NCI NIH HHS P30 CA006973NCI NIH HHS P30 CA051008NCI NIH HHS P30-CA-51008NCI NIH HHS P50 CA062924NCI NIH HHS P50 CA088843NCI NIH HHS P50CA62924-05NCI NIH HHS P50CA88843NCI NIH HHS R01 CA105090NCI NIH HHS R01CA105090-01A1NCI NIH HHS R01 CA 36397NCI NIH HHS R01 CA 63705NCI NIH HHS RC4 CA153828NCI NIH HHS U01 CA078284NCRR NIH HHS M01 RR000043NCRR NIH HHS M01 RR00043NHLBI NIH HHS HL 99-024
6 · The paper itself

Abstract

backgroundDeleterious mutations of the BRCA1 and BRCA2 genes confer susceptibility to breast and ovarian cancer. At least 7 models for estimating the probabilities of having a mutation are used widely in clinical and scientific activities; however, the merits and limitations of these models are not fully understood.

objectiveTo systematically quantify the accuracy of the following publicly available models to predict mutation carrier status: BRCAPRO, family history assessment tool, Finnish, Myriad, National Cancer Institute, University of Pennsylvania, and Yale University.

designCross-sectional validation study, using model predictions and BRCA1 or BRCA2 mutation status of patients different from those used to develop the models.

settingMulticenter study across Cancer Genetics Network participating centers. PATIENTS: 3 population-based samples of participants in research studies and 8 samples from genetic counseling clinics. MEASUREMENTS: Discrimination between individuals testing positive for a mutation in BRCA1 or BRCA2 from those testing negative, as measured by the c-statistic, and sensitivity and specificity of model predictions.

resultsThe 7 models differ in their predictions. The better-performing models have a c-statistic around 80%. BRCAPRO has the largest c-statistic overall and in all but 2 patient subgroups, although the margin over other models is narrow in many strata. Outside of high-risk populations, all models have high false-negative and false-positive rates across a range of probability thresholds used to refer for mutation testing. LIMITATION: Three recently published models were not included.

conclusionsAll models identify women who probably carry a deleterious mutation of BRCA1 or BRCA2 with adequate discrimination to support individualized genetic counseling, although discrimination varies across models and populations.

Indexed as

Genes, BRCA1Genes, BRCA2Genetic Carrier ScreeningModels, StatisticalMutationAdultAgedBreast NeoplasmsCross-Sectional StudiesFemaleGenotypeHumansLikelihood FunctionsMaleMiddle AgedOvarian Neoplasms

Identifiers

PMID17909205
PMCPMC2423214

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.